RNA bioinformatics

From Molecular Biology Wiki

Contents 1 RNA Sequence Databases 2 RNA Sequence Databases Online 3 RNA Motif Prediction and Analysis 4 RNA Secondary Structure Prediction 5 RNA Untranslated Region Bioinformatics

RNA Sequence Databases

RNA Sequence Databases are storage centers of RNA sequence data compiled from sequencing cDNA and RNAs.

The amount of data collected is tremendous, with the DNA and RNA sequence databses having collected more than 100 Gigabases.

RNA Sequence Databases Online

• EMBL Nucleotide Sequence Datbase

RNA Motif Prediction and Analysis

RNA Secondary Structure Prediction

• RNABase

An RNA database which you can search for the RNA entry you are looking for by PDB or NDB code, author name, classification, experimental technique, resolution, or keywords. The RNA Structure Database

M-Fold

GeneBee RNA Secondary Structure Prediction
GeneBee RNA Secondary Structure Prediction Online

RNA Untranslated Region Bioinformatics

The following are excellent sources for UTR analysis:

UTRdb : The UTRdb is a database of UTR sequences from all species.

UTRscan