The Stanford Microarray Database: implementation of new analysis tools and open source release of software.

The Stanford Microarray Database: implementation of new analysis tools and open source release of software. Research Abstract Details 

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The Stanford Microarray Database: implementation of new analysis tools and open source release of software. Abstract Text:

Janos Demeter,Catherine Beauheim,Jeremy Gollub,Tina Hernandez-Boussard,Heng Jin,Donald Maier,John C Matese,Michael Nitzberg,Farrell Wymore,Zachariah K Zachariah,Patrick O Brown,Gavin Sherlock,Catherine A Ball,

The Stanford Microarray Database (SMD; http://smd.stanford.edu/) is a research tool and archive that allows hundreds of researchers worldwide to store, annotate, analyze and share data generated by microarray technology. SMD supports most major microarray platforms, and is MIAME-supportive and can export or import MAGE-ML. The primary mission of SMD is to be a research tool that supports researchers from the point of data generation to data publication and dissemination, but it also provides unrestricted access to analysis tools and public data from 300 publications. In addition to supporting ongoing research, SMD makes its source code fully and freely available to others under an Open Source license, enabling other groups to create a local installation of SMD. In this article, we describe several data analysis tools implemented in SMD and we discuss features of our software release.

The Stanford Microarray Database: implementation of new analysis tools and open source release of software. Publishing Authors By Initials

J Demeter,C Beauheim,J Gollub,T Hernandez-Boussard,H Jin,D Maier,JC Matese,M Nitzberg,F Wymore,ZK Zachariah,PO Brown,G Sherlock,CA Ball,

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The Stanford Microarray Database: implementation of new analysis tools and open source release of software. Journal Published:

PUBLICATION TYPE: Research Support, N.I.H., Extr

Journal: Nucleic acids research

VOLUME: 35

Page Numbers: D766-70

Journal Abbreviation: Nucleic Acids Res.

ISSN: 1362-4962

DAY: 20

MONTH: 12

YEAR: 2006

The Stanford Microarray Database: implementation of new analysis tools and open source release of software. Information

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LANGUAGE: eng

NlmUniqueID: 411011

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KEYWORDS: User-Computer Interface

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Grant and Affiliation Information for The Stanford Microarray Database: implementation of new analysis tools and open source release of software.

AFFILIATION: Department of Biochemistry, Stanford University School of Medicine, Stanford, CA, USA.

Country: England

AGENCY: United States NHGRI

GRANT: R01 HG003469

ACRONYM: HG

MEDLINETA: Nucleic Acids Res

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