TandTRAQ: an open-source tool for integrated protein identification and quantitation.

TandTRAQ: an open-source tool for integrated protein identification and quantitation. Research Abstract Details 

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TandTRAQ: an open-source tool for integrated protein identification and quantitation. Abstract Text:

Ted Laderas,Cory Bystrom,Debra McMillen,Guang Fan,Shannon McWeeney,Ted Laderas,Cory Bystrom,Debra McMillen,Guang Fan,Shannon McWeeney,Ted Laderas,Cory Bystrom,Debra McMillen,Guang Fan,Shannon McWeeney,

SUMMARY: Integrating qualitative protein identification with quantitative protein analysis is non-trivial, given incompatibility in output formats. We present TandTRAQ, a standalone utility that integrates results from i-Tracker, an open-source iTRAQ quantitation program with the search results from X?Tandem, an open-source proteome search engine. The utility runs from the command-line and can be easily integrated into a pipeline for automation. Availability: The TandTRAQ Perl scripts are freely available for download at http://www.ohsucancer.com/isrdev/tandtraq/ CONTACT: laderast@ohsu.edu.

TandTRAQ: an open-source tool for integrated protein identification and quantitation. Publishing Authors By Initials

T Laderas,C Bystrom,D McMillen,G Fan,S McWeeney,T Laderas,C Bystrom,D McMillen,G Fan,S McWeeney,T Laderas,C Bystrom,D McMillen,G Fan,S McWeeney,

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TandTRAQ: an open-source tool for integrated protein identification and quantitation. Journal Published:

PUBLICATION TYPE: Journal Article

Journal: Bioinformatics (Oxford, England)

VOLUME: 23

Page Numbers: 3394-6

Journal Abbreviation: Bioinformatics

ISSN: 1460-2059

DAY: 25

MONTH: 09

YEAR: 2007

TandTRAQ: an open-source tool for integrated protein identification and quantitation. Information

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LANGUAGE: eng

NlmUniqueID: 9808944

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AFFILIATION: Informatics Shared Resource, OHSU Cancer Institute, Oregon Clinical and Translational Research Institute, Proteomics Shared Resource and Department of Anatomical Pathology, Oregon Health & Science University, Portland, Oregon 97212, USA.

Country: England

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MEDLINETA: Bioinformatics

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