ProteomeCommons.org IO Framework: reading and writing multiple proteomics data formats.

ProteomeCommons.org IO Framework: reading and writing multiple proteomics data formats. Research Abstract Details 

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ProteomeCommons.org IO Framework: reading and writing multiple proteomics data formats. Abstract Text:

J A Falkner,J W Falkner,P C Andrews,

MOTIVATION: Effective use of proteomics data, specifically mass spectrometry data, relies on the ability to read and write the many mass spectrometer file formats. Even with mass spectrometer vendor-specific libraries and vendor-neutral file formats, such as mzXML and mzData it can be difficult to extract raw data files in a form suitable for batch processing and basic research. Introduced here are the ProteomeCommons.org Input and Output Framework, abbreviated to IO Framework, which is designed to abstractly represent mass spectrometry data. This project is a public, open-source, free-to-use framework that supports most of the mass spectrometry data formats, including current formats, legacy formats and proprietary formats that require a vendor-specific library in order to operate. The IO Framework includes an on-line tool for non-programmers and a set of libraries that developers may use to convert between various proteomics file formats. AVAILABILITY: The current source-code and documentation for the ProteomeCommons.org IO Framework is freely available at http://www.proteomecommons.org/current/531/

ProteomeCommons.org IO Framework: reading and writing multiple proteomics data formats. Publishing Authors By Initials

JA Falkner,JW Falkner,PC Andrews,

For similar information science: computing methodologies: software: user-computer interface research abstracts see: information science: computing methodologies: software: user-computer interface research

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ProteomeCommons.org IO Framework: reading and writing multiple proteomics data formats. Journal Published:

PUBLICATION TYPE: Research Support, N.I.H., Extr

Journal: Bioinformatics (Oxford, England)

VOLUME: 23

Page Numbers: 262-3

Journal Abbreviation: Bioinformatics

ISSN: 1460-2059

DAY: 22

MONTH: 11

YEAR: 2006

ProteomeCommons.org IO Framework: reading and writing multiple proteomics data formats. Information

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LANGUAGE: eng

NlmUniqueID: 9808944

ProteomeCommons.org IO Framework: reading and writing multiple proteomics data formats. Keywords Mesh Terms:

KEYWORDS: User-Computer Interface

MESH TERMS: methods

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Substance Name: Proteome

Registry Number: 0

Grant and Affiliation Information for ProteomeCommons.org IO Framework: reading and writing multiple proteomics data formats.

AFFILIATION: Department of Biochemistry, Program in Bioinformatics, Ann Arbor, MI 48109, USA. jfalkner@umich.edu

Country: England

AGENCY: United States NCRR

GRANT: P41-RR018627

ACRONYM: RR

MEDLINETA: Bioinformatics

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