MMM: a sequence-to-structure alignment protocol.

MMM: a sequence-to-structure alignment protocol. Research Abstract Details 

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MMM: a sequence-to-structure alignment protocol. Abstract Text:

Brajesh K Rai,Carlos J Madrid-Aliste,J Eduardo Fajardo, Fiser,

MOTIVATION: Accurate alignment of a target sequence to a template structure continues to be a bottleneck in producing good quality comparative protein structure models. RESULTS: Multiple Mapping Method (MMM) is a comparative protein structure modeling server with an emphasis on a novel alignment optimization protocol. MMM takes inputs from five profile-to-profile based alignment methods. The alternatively aligned regions from the input alignment set are combined according to their fit in the structural environment of the template structure. The resulting, optimally spliced MMM alignment is used as input to an automated comparative modeling module to produce a full atom model. AVAILABILITY: The MMM server is freely accessible at http://www.fiserlab.org/servers/mmm

MMM: a sequence-to-structure alignment protocol. Publishing Authors By Initials

BK Rai,CJ Madrid-Aliste,JE Fajardo,A Fiser,

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MMM: a sequence-to-structure alignment protocol. Journal Published:

PUBLICATION TYPE: Research Support, Non-U.S. Gov

Journal: Bioinformatics (Oxford, England)

VOLUME: 22

Page Numbers: 2691-2

Journal Abbreviation: Bioinformatics

ISSN: 1460-2059

DAY: 23

MONTH: 08

YEAR: 2006

MMM: a sequence-to-structure alignment protocol. Information

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LANGUAGE: eng

NlmUniqueID: 9808944

MMM: a sequence-to-structure alignment protocol. Keywords Mesh Terms:

KEYWORDS: Software

MESH TERMS: methods

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Grant and Affiliation Information for MMM: a sequence-to-structure alignment protocol.

AFFILIATION: Department of Biochemistry and Seaver Center for Bioinformatics, Albert Einstein College of Medicine 1300 Morris Park Avenue, Bronx, NY 10461, USA.

Country: England

AGENCY: United States NIGMS

GRANT: GM62519-04

ACRONYM: GM

MEDLINETA: Bioinformatics

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