Fast procedure for reconstruction of full-atom protein models from reduced representations.

Fast procedure for reconstruction of full-atom protein models from reduced representations. Research Abstract Details 

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Fast procedure for reconstruction of full-atom protein models from reduced representations. Abstract Text:

We introduce PULCHRA, a fast and robust method for the reconstruction of full-atom protein models starting from a reduced protein representation. The algorithm is particularly suitable as an intermediate step between coarse-grained model-based structure prediction and applications requiring an all-atom structure, such as molecular dynamics, protein-ligand docking, structure-based function prediction, or assessment of quality of the predicted structure. The accuracy of the method was tested on a set of high-resolution crystallographic structures as well as on a set of low-resolution protein decoys generated by a protein structure prediction algorithm TASSER. The method is implemented as a standalone program that is available for download from http://cssb.biology.gatech.edu/skolnick/files/PULCHRA. (c) 2008 Wiley Periodicals, Inc. J Comput Chem, 2008.

Fast procedure for reconstruction of full-atom protein models from reduced representations. Publishing Authors By Initials

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Fast procedure for reconstruction of full-atom protein models from reduced representations. Journal Published:

PUBLICATION TYPE: Journal Article

Journal: Journal of computational chemistry

VOLUME: 29

Page Numbers: 1460-5

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ISSN: 1096-987X

DAY: 15

MONTH: Jul

YEAR: 2008

Fast procedure for reconstruction of full-atom protein models from reduced representations. Information

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LANGUAGE: eng

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Grant and Affiliation Information for Fast procedure for reconstruction of full-atom protein models from reduced representations.

AFFILIATION: Burnham Institute for Medical Research, 10901 N. Torrey Pines Road, La Jolla, California 92037.

Country: United States

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MEDLINETA: J Comput Chem

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