Evaluating the automatic mapping of human gene and protein mentions to unique identifiers.

Evaluating the automatic mapping of human gene and protein mentions to unique identifiers. Research Abstract Details 

Research Abstract Table of Contents

Jump to the:

Evaluating the automatic mapping of human gene and protein mentions to unique identifiers. Abstract Text:

Alexander A Morgan,Benjamin Wellner,Jeffrey B Colombe,Robert Arens,Marc E Colosimo,Lynette Hirschman,Alexander A Morgan,Benjamin Wellner,Jeffrey B Colombe,Robert Arens,Marc E Colosimo,Lynette Hirschman,

We have developed a challenge task for the second BioCreAtIvE (Critical Assessment of Information Extraction in Biology) that requires participating systems to provide lists of the EntrezGene (formerly LocusLink) identifiers for all human genes and proteins mentioned in a MEDLINE abstract. We are distributing 281 annotated abstracts and another 5,000 noisily annotated abstracts along with a gene name lexicon to participants. We have performed a series of baseline experiments to better characterize this dataset and form a foundation for participant exploration.

Evaluating the automatic mapping of human gene and protein mentions to unique identifiers. Publishing Authors By Initials

AA Morgan,B Wellner,JB Colombe,R Arens,ME Colosimo,L Hirschman,AA Morgan,B Wellner,JB Colombe,R Arens,ME Colosimo,L Hirschman,

For similar abstracts research abstracts see: abstracts research

PUBMED ID PMID:

MEDLINE DATE:

Evaluating the automatic mapping of human gene and protein mentions to unique identifiers. Journal Published:

PUBLICATION TYPE: Journal Article

Journal: Pacific Symposium on Biocomputing. Pacific Symposi

VOLUME:

Page Numbers: 281-91

Journal Abbreviation:

ISSN: 1793-5091

DAY: 9

MONTH: 11

YEAR: 2007

Evaluating the automatic mapping of human gene and protein mentions to unique identifiers. Information

Number of References:

LANGUAGE: eng

NlmUniqueID: 9711271

Evaluating the automatic mapping of human gene and protein mentions to unique identifiers. Keywords Mesh Terms:

KEYWORDS:

MESH TERMS:

Chemical & Substance for Abstract: Evaluating the automatic mapping of human gene and protein mentions to unique identifiers. Information

Substance Name:

Registry Number:

Grant and Affiliation Information for Evaluating the automatic mapping of human gene and protein mentions to unique identifiers.

AFFILIATION: MITRE Corporation, 202 Burlington Road Bedford, MA 01730, USA. alexmo@stanford.edu

Country: Singapore

AGENCY:

GRANT:

ACRONYM:

MEDLINETA: Pac Symp Biocomput

REFSOURCE:

DATABASENAME:

ACCESSION NUMBER:

Number Hits: 0

Evaluating the automatic mapping of human gene and protein mentions to unique identifiers Related Publications

• "Exit, Voice, and Loyalty:" further reflections and a survey of recent contributions.
• Advantages and disadvantages of the types of intraocular lens available.
• Effects of irradiation on the calcifying mechanism of epiphyseal cartilage.
• Evaluating the automatic mapping of human gene and protein mentions to unique identifiers.
• Intraocular lens implantation: faster, more complete rehabilitation of the cataract patient.
• Linking genes to literature: text mining, information extraction, and retrieval applications for biology.
• Overview of BioCreative II gene normalization.
• Staining of fresh epiphyseal cartilage with toluidine blue. Demonstration of previously unreported intracellular beta- and gamma-metachromatic granules.
• Working with families of hospitalized older adults with dementia: caregivers are useful resources and should be part of the care team.
• [Not Available.]