DB-PABP: a database of polyanion-binding proteins.

DB-PABP: a database of polyanion-binding proteins. Research Abstract Details 

Research Abstract Table of Contents

Jump to the:

DB-PABP: a database of polyanion-binding proteins. Abstract Text:

Jianwen Fang,Yinghua Dong,Nazila Salamat-Miller,C Russell Middaugh,Jianwen Fang,Yinghua Dong,Nazila Salamat-Miller,C Russell Middaugh,Jianwen Fang,Yinghua Dong,Nazila Salamat-Miller,C Russell Middaugh,Jianwen Fang,Yinghua Dong,Nazila Salamat-Miller,C Russell Middaugh,

The interactions between polyanions (PAs) and polyanion-binding proteins (PABPs) have been found to play significant roles in many essential biological processes including intracellular organization, transport and protein folding. Furthermore, many neurodegenerative disease-related proteins are PABPs. Thus, a better understanding of PA/PABP interactions may not only enhance our understandings of biological systems but also provide new clues to these deadly diseases. The literature in this field is widely scattered, suggesting the need for a comprehensive and searchable database of PABPs. The DB-PABP is a comprehensive, manually curated and searchable database of experimentally characterized PABPs. It is freely available and can be accessed online at http://pabp.bcf.ku.edu/DB_PABP/. The DB-PABP was implemented as a MySQL relational database. An interactive web interface was created using Java Server Pages (JSP). The search page of the database is organized into a main search form and a section for utilities. The main search form enables custom searches via four menus: protein names, polyanion names, the source species of the proteins and the methods used to discover the interactions. Available utilities include a commonality matrix, a function of listing PABPs by the number of interacting polyanions and a string search for author surnames. The DB-PABP is maintained at the University of Kansas. We encourage users to provide feedback and submit new data and references.

DB-PABP: a database of polyanion-binding proteins. Publishing Authors By Initials

J Fang,Y Dong,N Salamat-Miller,C Russell Middaugh,J Fang,Y Dong,N Salamat-Miller,C Russell Middaugh,J Fang,Y Dong,N Salamat-Miller,C Russell Middaugh,J Fang,Y Dong,N Salamat-Miller,CR Middaugh,

For similar information science: computing methodologies: software: user-computer interface research abstracts see: information science: computing methodologies: software: user-computer interface research

PUBMED ID PMID:

MEDLINE DATE:

DB-PABP: a database of polyanion-binding proteins. Journal Published:

PUBLICATION TYPE: Research Support, Non-U.S. Gov

Journal: Nucleic acids research

VOLUME: 36

Page Numbers: D303-6

Journal Abbreviation: Nucleic Acids Res.

ISSN: 1362-4962

DAY: 4

MONTH: 10

YEAR: 2007

DB-PABP: a database of polyanion-binding proteins. Information

Number of References:

LANGUAGE: eng

NlmUniqueID: 411011

DB-PABP: a database of polyanion-binding proteins. Keywords Mesh Terms:

KEYWORDS: User-Computer Interface

MESH TERMS: metabolism

Chemical & Substance for Abstract: DB-PABP: a database of polyanion-binding proteins. Information

Substance Name: Heparitin Sulfate

Registry Number: 9050-30-0

Grant and Affiliation Information for DB-PABP: a database of polyanion-binding proteins.

AFFILIATION: Bioinformatics Core Facility, Information and Telecommunication Technology Center, University of Kansas, Lawrence, KS 66047, USA.

Country: England

AGENCY: United States NCRR

GRANT: P20 RR016475

ACRONYM: RR

MEDLINETA: Nucleic Acids Res

REFSOURCE:

DATABASENAME:

ACCESSION NUMBER:

Number Hits: 0

DB-PABP: a database of polyanion-binding proteins Related Publications

• DB-PABP: a database of polyanion-binding proteins.