-Matthew P Jacobson Researcher Activity Profile

Research Author Detailed Information 

Matthew P Jacobson Publication Rate By Year

Matthew P Jacobson has published 1 paper(s) in 2005, 2 paper(s) in 2006, 9 paper(s) in 2007, 1 paper(s) in 2008, for a total of 13 research publications in total.

Matthew P Mp Jacobson Author Information

LAST NAME: jacobson

FIRST NAME: Matthew P

INITIALS: mp

AFFILIATION:

Papers

Matthew P Jacobson's Publication Record

1. Virtual ligand screening against Escherichia coli dihydrofolate reductase: improving docking enrichment using physics-based methods. Year Published: 2005
Department of Pharmaceutical Chemistry, University of California, San Francisco, CA, USA.
2. Conformational flexibility, internal hydrogen bonding, and passive membrane permeability: successful in silico prediction of the relative permeabilities of cyclic peptides. Year Published: 2006
Department of Chemistry and Biochemistry, University of California at Santa Cruz, Santa Cruz, CA 95064, USA.
3. Molecular mechanics methods for predicting protein-ligand binding. Year Published: 2007
Department of Pharmaceutical Chemistry, University of California San Francisco, UCSF MC 2240, Genentech Hall, Room N472C, 600 16th St., San Francisco, CA 94158-2517, USA.
4. Strengths of hydrogen bonds involving phosphorylated amino acid side chains. Year Published: 2007
Graduate Program in Biological and Medical Informatics, Department of Pharmaceutical Chemistry, and Graduate Group in Biophysics, University of California, San Francisco, California 94143, USA.
5. Intracellular pH sensors: design principles and functional significance. Year Published: 2007
Department of Cell and Tissue Biology, Unicversity of California-San Francisco, San Francisco, CA, USA.
6. Assignment of polar states for protein amino acid residues using an interaction cluster decomposition algorithm and its application to high resolution protein structure modeling. Year Published: 2007
Department of Chemistry, Columbia University, New York, NY 10027, USA.
7. Prediction of side-chain conformations on protein surfaces. Year Published: 2007
Center for Molecular Modeling, Center for Information Technology, National Institutes of Health, Bethesda, Maryland 20892-5624, USA. xiangz@mail.nih.gov
8. Physics-based methods for studying protein-ligand interactions. Year Published: 2007
Department of Pharmaceutical Chemistry, University of California San Francisco, 600 16th Street, San Francisco, CA 94158-2517, USA.
9. Prediction and assignment of function for a divergent N-succinyl amino acid racemase. Year Published: 2007
Department of Biochemistry, University of Illinois at Urbana-Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801, USA.
10. Cardiovascular risk factors and homocysteine in epilepsy. Year Published: 2007
The Ohio State University, Department of Neurology, 430 Means Hall, 1654 Upham Drive, Columbus, OH 43210, United States. John.Elliott@osumc.edu
11. An atomistic model of passive membrane permeability: application to a series of FDA approved drugs. Year Published: 2007
Department of Pharmaceutical Chemistry, UCSF, San Francisco, CA, 94158-2517, USA, matt.jacobson@ucsf.edu.
12. Testing the conformational hypothesis of passive membrane permeability using synthetic cyclic peptide diastereomers. Year Published: 2006
Department of Chemistry and Biochemistry, University of California, Santa Cruz, 95064, USA.
13. Conformational selection in silico: loop latching motions and ligand binding in enzymes. Year Published: 2008
Department of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, California 94158-2517, USA.