-Ruedi Aebersold Researcher Activity Profile

Research Author Detailed Information 

Ruedi Aebersold Publication Rate By Year

Ruedi Aebersold has published 1 paper(s) in 2005, 4 paper(s) in 2006, 38 paper(s) in 2007, 11 paper(s) in 2008, for a total of 54 research publications in total.

Ruedi R Aebersold Author Information

LAST NAME: aebersold

FIRST NAME: Ruedi

INITIALS: r

AFFILIATION:

Papers

Ruedi Aebersold's Publication Record

1. Solid-phase extraction of N-linked glycopeptides. Year Published: 2007
Institute for Systems Biology, Seattle, Washington 98103, USA.
2. A high-quality catalog of the Drosophila melanogaster proteome. Year Published: 2007
Center for Model Organism Proteomes, University of Zurich, Winterthurerstrasse 190, 8057 Zurich, Switzerland. erich.brunner@molbio.uzh.ch
3. Using stable isotope tagging and mass spectrometry to characterize protein complexes and to detect changes in their composition. Year Published: 2007
Institute for Systems Biology, Seattle, WA, USA.
4. Absolute quantification of specific proteins in complex mixtures using visible isotope-coded affinity tags. Year Published: 2007
Department of Chemistry, University of Washington, Seattle, USA.
5. Investigation of neutral loss during collision-induced dissociation of peptide ions. Year Published: 2005
Institute for Systems Biology, Seattle, Washington 98103, USA. dmartin@systemsbiology.org
6. Optimized peptide separation and identification for mass spectrometry based proteomics via free-flow electrophoresis. Year Published: 2006
7. Protein cross-linking analysis using mass spectrometry, isotope-coded cross-linkers, and integrated computational data processing. Year Published: 2006
Department of Chemistry, University of Washington, Seattle, Washington 98195, USA.
8. Quantitative proteomic analysis of the budding yeast cell cycle using acid-cleavable isotope-coded affinity tag reagents. Year Published: 2006
Department of Molecular Biology and Biochemistry, Wesleyan University, Middletown, CT 06459, USA. mflory@wesleyan.edu
9. Comparison of pancreas juice proteins from cancer versus pancreatitis using quantitative proteomic analysis. Year Published: 2007
Division of Gastroenterology/Department of Medicine, University of Washington, Seattle, WA, USA.
10. Mass spectrometric detection of tissue proteins in plasma. Year Published: 2007
Institute for Systems Biology, Seattle, Washington 98103, USA. hzhang23@jhmi.edu
11. Analysis of the Saccharomyces cerevisiae proteome with PeptideAtlas. Year Published: 2007
Institute for Systems Biology, N 34th Street, Seattle, WA 98103, USA. nking@systemsbiology.org
12. High-accuracy proteome maps of human body fluids. Year Published: 2007
Institute for Molecular Systems Biology, ETH Zurich, Wolfgang-Pauli-Strasse 16, CH-8093 Zurich, Switzerland.
13. Reproducible isolation of distinct, overlapping segments of the phosphoproteome. Year Published: 2007
14. Development and validation of a spectral library searching method for peptide identification from MS/MS. Year Published: 2007
Institute for Systems Biology, Seattle, WA, USA.
15. An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics: application to Drosophila melanogaster Kc167 cells. Year Published: 2007
Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland.
16. A statistical method for chromatographic alignment of LC-MS data. Year Published: 2007
Fred Hutchinson Cancer Research Center, Seattle, WA, USA. pwang@fhcrc.org
17. UniPep--a database for human N-linked glycosites: a resource for biomarker discovery. Year Published: 2007
Institute for Systems Biology, Seattle, WA 98103, USA. hzhang@systemsbiology.org
18. SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling. Year Published: 2007
Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland. lukas.mueller@imsb.biol.ethz.ch
19. SPARC from olfactory ensheathing cells stimulates Schwann cells to promote neurite outgrowth and enhances spinal cord repair. Year Published: 2007
Department of Zoology, Life Sciences Institute, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z3.
20. An essential switch in subunit composition of a chromatin remodeling complex during neural development. Year Published: 2007
Howard Hughes Medical Institute and Department of Developmental Biology, Stanford University, Stanford, CA 94305, USA.
21. Analysis of protein complexes using mass spectrometry. Year Published: 2007
Samuel Lunenfeld Research Institute, Mount Sinai Hospital, 600 University Ave, Room 992A, Toronto, Ontario, M5G 1X5, Canada. gingras@mshri.on.ca
22. Isolation of N-linked glycopeptides from plasma. Year Published: 2007
Institute for Systems Biology, Seattle, Washington 98103, USA.
23. Quantitative proteomics analysis reveals that proteins differentially expressed in chronic pancreatitis are also frequently involved in pancreatic cancer. Year Published: 2007
Division of Gastroenterology, Department of Medicine, University of Washington, Seattle, Washington 98195, USA. ruc@medicine.washington.edu
24. Activator-mediated recruitment of the MLL2 methyltransferase complex to the beta-globin locus. Year Published: 2007
Sprott Center for Stem Cell Research, Ottawa Health Research Institute, 501 Smyth Road, Ottawa, ON K1H 8L6, Canada.
25. The implications of proteolytic background for shotgun proteomics. Year Published: 2007
26. Advances in proteomic workflows for systems biology. Year Published: 2007
27. Analysis and validation of proteomic data generated by tandem mass spectrometry. Year Published: 2007
University of Michigan, Department of Pathology and Center for Computational Medicine and Biology, Ann Arbor, Michigan 48105, USA.
28. The toposome, essential for sea urchin cell adhesion and development, is a modified iron-less calcium-binding transferrin. Year Published: 2007
Department of Cell and Molecular Biology, University of Hawaii, School of Medicine, 1960 East-West Road, Honolulu, HI 96822, USA. hansnoll1@comcast.net
29. Assessing bias in experiment design for large scale mass spectrometry-based quantitative proteomics. Year Published: 2007
Departments of Computer Science and Engineering, University of Washington, Seattle, Washington 98195, USA. amol@cs.washington.edu
30. High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites. Year Published: 2007
Applied Biosystems, 64293 Darmstadt, Germany.
31. SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling. Year Published: 2007
Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland. lukas.mueller@imsb.biol.ethz.ch
32. S6K1-mediated disassembly of mitochondrial URI/PP1gamma complexes activates a negative feedback program that counters S6K1 survival signaling. Year Published: 2007
Institute of Cell Biology, Swiss Federal Institute of Technology (ETH) Zurich, 8093 Zurich, Switzerland.
33. The transcription elongation factor TFIIS is a component of RNA polymerase II preinitiation complexes. Year Published: 2007
Institute for Systems Biology, 1441 North 34th Street, Seattle, WA 98103, USA.
34. PhosphoPep--a phosphoproteome resource for systems biology research in Drosophila Kc167 cells. Year Published: 2007
Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland.
35. The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics. Year Published: 2007
School of Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK.
36. HUPO Plasma Proteome Project 2007 Workshop Report. Year Published: 2007
Human Genetics and Public Health, Center for Computational Medicine and Biology, University of Michigan, Ann Arbor, Michigan 48109.
37. Advances in proteomic workflows for systems biology. Year Published: 2007
38. The toposome, essential for sea urchin cell adhesion and development, is a modified iron-less calcium-binding transferrin. Year Published: 2007
Department of Cell and Molecular Biology, University of Hawaii, School of Medicine, 1960 East-West Road, Honolulu, HI 96822, USA. hansnoll1@comcast.net
39. The standard protein mix database: a diverse data set to assist in the production of improved Peptide and protein identification software tools. Year Published: 2008
dmartin@systemsbiology.org.
40. The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics. Year Published: 2007
School of Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK.
41. An ent-kaurene that inhibits mitotic chromosome movement and binds the kinetochore protein ran-binding protein 2. Year Published: 2006
Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, British Columbia V6T 1Z3, Canada.
42. Quantitative proteomic analysis of protein complexes: concurrent identification of interactors and their state of phosphorylation. Year Published: 2008
Institute for Molecular Systems Biology, ETH, 8093 Zürich, Switzerland.
43. S6K1-mediated disassembly of mitochondrial URI/PP1gamma complexes activates a negative feedback program that counters S6K1 survival signaling. Year Published: 2007
Institute of Cell Biology, Swiss Federal Institute of Technology (ETH) Zurich, 8093 Zurich, Switzerland.
44. An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data. Year Published: 2008
Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland. lukas.mueller@imsb.biol.ethz.ch
45. Investigating MS2/MS3 matching statistics: a model for coupling consecutive stage mass spectrometry data for increased peptide identification confidence. Year Published: 2008
Department of Biological Chemistry, University of Michigan, Ann Arbor, Michigan 48103, USA.
46. The standard protein mix database: a diverse data set to assist in the production of improved Peptide and protein identification software tools. Year Published: 2008
Institute for Systems Biology, Seattle, Washington 98103, USA.
47. An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data. Year Published: 2008
Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland. lukas.mueller@imsb.biol.ethz.ch
48. Atbf1 is required for the Pit1 gene early activation. Year Published: 2008
Howard Hughes Medical Institute and Department of Medicine, School of Medicine, University of California at San Diego, La Jolla, CA 92093.
49. Quantitative proteome analysis using isotope-coded affinity tags and mass spectrometry. Year Published: 2007
Children's Cancer Research Institute, The University of Texas Health Science Center, San Antonio, Texas 78229, USA.
50. Solid-phase extraction of N-linked glycopeptides. Year Published: 2007
Institute for Systems Biology, Seattle, Washington 98103, USA.
51. Quantitative proteomic analysis of protein complexes: concurrent identification of interactors and their state of phosphorylation. Year Published: 2008
52. Quantitative proteomic analysis to profile dynamic changes in the spatial distribution of cellular proteins. Year Published: 2008
Institute for Systems Biology, Seattle, WA.
53. Identification of cross-linked peptides from large sequence databases. Year Published: 2008
54. Identification of cross-linked peptides from large sequence databases. Year Published: 2008