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A non-radioactive electrophoretic mobility shift assay for the detection of heat shock element (HSE) - http://www.fgsc.net/fgn45/45meyer.html

Category: DNA Protocols: EMSA DNA-Protein Protocols

A non-radioactive electrophoretic mobility shift assay based on the digoxigenin detection system had been developed and applied to the analysis of the interaction between the heat shock transcription factor and the heat shock element of N. crassa. (Bioch - [Read A non-radioactive electrophoretic mobility shift assay for the detection of heat shock element (HSE)]

Electro Mobility Shift Assay Protocol - http://ruummc.med.uu.nl/subsite/RepHTML/Protocols/EMSARdJ.html

Category: DNA Protein Interactions Protocols: Electrophoretic Mobility Shift Assays EMSA Protocols

Protocol electro mobility shift assay (EMSA) optimized for pTP. - [Read Electro Mobility Shift Assay Protocol]

Electrophoretic Mobility Shift Assay (EMSA) for the detection of nuclear NF-kB - http://www.celldeath.de/apometh/emsa.html

Category: DNA Protocols: EMSA DNA-Protein Protocols

Electrophoretic Mobility Shift Assay (EMSA) for the detection of nuclear NF-kB. CellDeath.de - [Read Electrophoretic Mobility Shift Assay (EMSA) for the detection of nuclear NF-kB]

Gel Mobility Shift Assay Conditions -Mg/EDTA in Gel and Buffer Protocol - http://www.fhcrc.org/science/labs/hahn/methods/biochem_meth/gel_shift.html

Category: DNA Protein Interactions Protocols: Electrophoretic Mobility Shift Assays EMSA Protocols

Protocol for gel mobility shift assay conditions -Mg/EDTA in gel and buffer. - [Read Gel Mobility Shift Assay Conditions -Mg/EDTA in Gel and Buffer Protocol]

Gel Mobility Shift Assay in PDF format - http://www.biochem.northwestern.edu/ibis/morimoto/Protocols/III.%20Proteins/C.%20DNA-Protein%20Interactions/3a.%20GMSA.pdf

Category: DNA Protocols: EMSA DNA-Protein Protocols

This protocol works well for HSF DNA-binding activity experiments. - [Read Gel Mobility Shift Assay in PDF format]

Gel Mobility Shift Assay Protocol - http://www.biochem.northwestern.edu/ibis/morimoto/research/Protocols/III.%20Proteins/C.%20DNA-Protein%20Interactions/3a.%20GMSA.pdf

Category: DNA Protein Interactions Protocols: Electrophoretic Mobility Shift Assays EMSA Protocols

Protocol for gel mobility shift assay. - [Read Gel Mobility Shift Assay Protocol]

Gel Retardation Assays for DNA-binding Proteins Protocol - http://www.cshprotocols.org/cgi/content/extract/2006/2/pdb.prot3948

Category: Nucleic Acid Electrophoresis Protocols: DNA Electrophoresis Protocols: DNA Electrophoresis in Polyacrylamide Gels Protocols

Protocol exploits differences in electrophoretic mobility through a nondenaturing polyacrylamide gel between a rapidly migrating target DNA and a more slowly migrating DNA-protein complex. - [Read Gel Retardation Assays for DNA-binding Proteins Protocol]

Introduction to the EMSA (Gel Shift) Technique - http://www.piercenet.com/Proteomics/browse.cfm?fldID=7EDAC33E-3981-4E58-8A57-057A8280C68F

Category: DNA Protocols: EMSA DNA-Protein Protocols

A non-radioactive electrophoretic mobility which works quite well using biotin and streptavidin detection. Non-specific and specific competititor, oligo labeling, Binding Reaction. Pierce - [Read Introduction to the EMSA (Gel Shift) Technique]

Mapping Protein-binding Sites on DNA by Dnase I Footprinting Protocol - http://www.cshprotocols.org/cgi/content/extract/2006/2/pdb.prot3947

Category: DNA Protein Interactions Protocols: Dnase Footprinting Assay Protocols

Dnase I is used to fragment a radiolabeled target DNA in the presence and absence of a nuclear extract. A "footprint" is generated when a protein binds to the target and protects a specific segment of DNA from the nucleolytic activity of Dnase I. By comparing the electrophoretic mobility of the Dnase I cleavage products to those of a sequence ladder derived from the same DNA fragment, the position(s) of the DNA sequences recognized by DNA-binding proteins can be determined. - [Read Mapping Protein-binding Sites on DNA by Dnase I Footprinting Protocol]

Radiolabeling of Probes for Electrophoretic Mobility Shift Assay - http://faculty.virginia.edu/mirmira/resources_files/Protocols/Radiolabeling.htm

Category: DNA Protocols: EMSA DNA-Protein Protocols

Creation of Probe for EMSA using Oligonucleotide annealing, p-32, and T4 Polynucleotide Kinase. - [Read Radiolabeling of Probes for Electrophoretic Mobility Shift Assay]

Radiolabeling of Probes for Electrophoretic Mobility Shift Assays Protocol - http://faculty.virginia.edu/mirmira/resources_files/Protocols/Radiolabeling.htm

Category: DNA Protein Interactions Protocols: Electrophoretic Mobility Shift Assays EMSA Protocols

Protocol for radiolabeling of probes for electrophoretic mobility shift assays. - [Read Radiolabeling of Probes for Electrophoretic Mobility Shift Assays Protocol]

RNA EMSA (electrophoretic mobility shift assays) and UV cross-linking - http://www.biochemj.org/bj/377/0629/bj3770629.htm

Category: RNA Protocols: RNA-binding Protein EMSA Interactions

SULLY et al., 2004 Biochem. J. 377 (629â€“639). - [Read RNA EMSA (electrophoretic mobility shift assays) and UV cross-linking]

Single-Strand Conformation Polymorphism Analysis Protocol - http://www.cshprotocols.org/cgi/content/extract/2006/14/pdb.prot4118

Category: Genetics and Genomics: Cancer Genetics Protocols: Single Strand Conformational Polymorphism(SSCP) Protocols

Single-strand confirmation polymorphism analysis (SSCP) is a powerful and robust method for the detection of DNA sequence changes (single-base substitutions) based on shifts in electrophoretic mobility. In this protocol, the target sequence is simultaneously labeled and amplified, then heat-denatured and resolved by non-denaturing polyacrylamide gel electrophoresis. - [Read Single-Strand Conformation Polymorphism Analysis Protocol]

Single-Strand Conformation Polymorphism Analysis Protocol - http://www.cshprotocols.org/cgi/content/extract/2006/14/pdb.prot4118

Category: DNA Protein Interactions Protocols: Electrophoretic Mobility Shift Assays EMSA Protocols

The target sequence is simultaneously labeled and amplified, then heat-denatured and resolved by non-denaturing polyacrylamide gel electrophoresis. Differences in sequence alter the conformation of the DNA and hence its electrophoretic mobility and, because of the high resolution of polyacrylamide gels, most conformational changes caused by subtle changes in sequence can be detected. - [Read Single-Strand Conformation Polymorphism Analysis Protocol]