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A Concise Guide to cArray Hybridization Procedures - DNA Microarray Analysis - http://www.tigr.org/tdb/microarray/conciseguide.html

Category: DNA Microarray Protocols

Hegde et al., Array Fabrication, microarray Printing, Probe Preparation and Hybridization, RNA Extraction, RNA labeling, Data Collection, Normalization, and Analysis.Institute for Genomic Research, Rockville, MD - [Read A Concise Guide to cArray Hybridization Procedures - DNA Microarray Analysis]

A semi-permanent mounting medium for immunofluorescence microscopy - http://www.hei.org/research/aemi/moviol.htm

Category: Molecular Imaging: Light Microscopy

A semi-permanent mounting medium for immunofluorescence microscopy. House Ear Institute - [Read A semi-permanent mounting medium for immunofluorescence microscopy]

Additional slide pre-treatment for mapping smaller insert clones - http://www.sanger.ac.uk/HGP/methods/cytogenetics/additional_treatment.shtml

Category: Cytogenetics Protocols: Fluorescent In Situ Hybridization FISH Protocol

Additional slide pre-treatment for mapping smaller insert clones for FISH. Sanger Institute. - [Read Additional slide pre-treatment for mapping smaller insert clones]

CGH array hybridisation Protocol - http://www.sanger.ac.uk/HGP/methods/cytogenetics/Hyb.shtml

Category: Cytogenetics Protocols: Array CGH

Detailed CGH array hybridisation (gridsize: 2 x 1.5 cm). Sanger Institute. - [Read CGH array hybridisation Protocol]

CHROMATIN IMMUNOPRECIPITATION (CHIP) PROTOCOL FOR YEAST PDF - http://research.stowers-institute.org/jeg/2004/cohesin/protocols/ChIP.pdf

Category: DNA Protocols: Chromatin Immunoprecipitation Protocols

Protocol derived from a paper by Miriam Braunstein and is based on work from the Allis lab. - [Read CHROMATIN IMMUNOPRECIPITATION (CHIP) PROTOCOL FOR YEAST PDF]

Chromatin immunoprecipitation protocol to analyze histone modifications in Arabidopsis thaliana - http://vkp.leeds.ac.uk/Drive/Drive/ViewFile?include=y&component=security&action=Start&nextAction=gotoDoc&doc=494824#search=%22chromatin%20immunoprecipitation%20protocol%22

Category: Epigenetics and Methylation Protocols: ChIP Chromatin Immunoprecipitation Protocols

Chromatin immunoprecipitation protocol to analyze histone modifications in Arabidopsis thaliana. Werner Aufsatz, Matzke Lab. Gregor Mendel Institute of Molecular Plant Biology, Austria. Includes Chromatin Crosslinking, Chromatin preparation, Pre-clearing and immuno precipitation (IP), Collection,washes and elution of immune complexes, Reverse crosslinking and DNA cleanup - [Read Chromatin immunoprecipitation protocol to analyze histone modifications in Arabidopsis thaliana]

COMPARATIVE GENOMIC HYBRIDIZATION (CGH) PROTOCOL - http://users.ugent.be/~fspelema/neubla/protocol/cgh.htm

Category: Cytogenetics Protocols: Comparative Genomic Hybridization CGH Protocols

SAVING OF DAPI-IMAGES, SLIDE PRETREATMENT, PROBE PREPARATION, PROBE DETECTION, washing blocking detection, Counterstaining with DAPI. Institute of Pathology,Humboldt-University of Berlin - [Read COMPARATIVE GENOMIC HYBRIDIZATION (CGH) PROTOCOL]

Cyanine Dye Purification Protocol Cy - http://cmgm.stanford.edu/pbrown/mguide/hplc.html

Category: DNA Microarray Protocols

Cyanine Dye Purification Protocol using Sep-Pak and HPLC purification protocol for Cy dyes (un)incorporated with dNTP. Brown Lab Howard Hughes Medical Institute - [Read Cyanine Dye Purification Protocol Cy]

Derivation of Mouse Embryonic Fibroblasts (MEF) Part I PDF - http://www.wicell.org/uploads/media/Protocols_Part_1_05.pdf

Category: Cell Biology and Cell Culture: ES Stem Cell Biology and Culture: MEF Protocols Mouse Embryonic Fibroblasts

WiCell Research Institute. Recipes, Frequently Asked Questions, Mouse Embryo Extraction and Tissue, Harvesting Mouse Embryonic Fibroblasts (MEF)from mice. - [Read Derivation of Mouse Embryonic Fibroblasts (MEF) Part I PDF]

DNA FIBERS FISH - http://www.sanger.ac.uk/HGP/methods/cytogenetics/fiber_fish.shtml

Category: Cytogenetics Protocols: Fluorescent In Situ Hybridization FISH Protocol

DNA FIBERS FISH Protocol and Methods. Sanger Institute. - [Read DNA FIBERS FISH]

DNA preparation by cryotom tissue dissection - http://amba.charite.de/cgh/protocol/02/mapeng02.htm

Category: Cytogenetics Protocols: Comparative Genomic Hybridization CGH Protocols

DNA preparation by cryotom tissue dissection for CGH Comparative Genomic Hybridization. Institute of Pathology "Rudolf- Virchow-Haus" University Hospital CharitÃ© - [Read DNA preparation by cryotom tissue dissection]

ES cell culture protocols (2005 update) PDF Excellent - http://www.mshri.on.ca/cores/ESfacility/ESculture.pdf

Category: Cell Biology and Cell Culture: ES Stem Cell Biology and Culture: ES Cell Growth Media and Requirements

ES cell culture protocols (2005 update) PDF Excellent. ES cell facility, Samuel Lunenfeld Research Institute, Mount Sinai Hospital. - [Read ES cell culture protocols (2005 update) PDF Excellent]

FISH Hybridization Protocol - http://www.sanger.ac.uk/HGP/methods/cytogenetics/hybridisation.shtml

Category: Cytogenetics Protocols: Fluorescent In Situ Hybridization FISH Protocol

FISH Hybridization Protocol. Sanger Institute. - [Read FISH Hybridization Protocol]

Freezing and Thawing cells -Bart's Cookbook - http://pingu.salk.edu/~sefton/Hyper_protocols/freezeThaw.html

Category: Cell Biology and Cell Culture: Cell Culture Techniques: Cell Line Preservation Freezing

Freezing and thawing adherent and suspended cells. - Bart's Cookbook. Sefton Lab, Salk Institute. - [Read Freezing and Thawing cells -Bart's Cookbook]

Hybridisation of Interphase Nuclei Protocol - http://www.sanger.ac.uk/HGP/methods/cytogenetics/interphase_hybridisation.shtml

Category: Cytogenetics Protocols: Fluorescent In Situ Hybridization FISH Protocol

Hybridisation of Interphase Nuclei Method. Sanger Institute. - [Read Hybridisation of Interphase Nuclei Protocol]

Immunohistochemistry using Anti-Ganglioside Antibodies - http://www.glycotech.com/protocols/Proto2.html

Category: Molecular Biology Protocols: Carbohydrate Protocols

Indirect method measuring immunofluorescence coupled to second antibody. Best for membrane antigens in addition to intra- and extracellular antigens, may be applied to frozen tissue sections, to cells in suspension, and to cells attached to glass slides or coverslips. Tadashi Tai~Head, Department of Tumor Immunology, The Tokyo Metropolitan Institute of Medical Science, Tokyo, Japan - [Read Immunohistochemistry using Anti-Ganglioside Antibodies]

Interphase nuclei - http://www.sanger.ac.uk/HGP/methods/cytogenetics/interphase_nuclei.shtml

Category: Cytogenetics Protocols: Fluorescent In Situ Hybridization FISH Protocol

Interphase nuclei preparation for FISH. Sanger Institute. - [Read Interphase nuclei]

LB Plates Pouring and Preparation - http://www.bbri.org/faculty/smith/LB_Plates.html

Category: Microbiology: Bacterial E.Coli Culture Media & Plates

LB Plates Pouring and Preparation. antibiotics addition. Janet Smith, Boston Biomedical Research Institute - [Read LB Plates Pouring and Preparation]

Light Microscopy - Microscopes in Cell Biology - http://www.hei.org/research/aemi/lm.htm

Category: Molecular Imaging: Light Microscopy

Light Microscopy - Microscopes in Cell Biology. House Ear Institute. Fluorescence microscopy, Nomarski differential interference contrast, Comparison between phase contrast and interference contrast optical systems , Interference contrast, Phase contrast, Darkfield illumination, alignment of Kohler illumination system, Protocol for using oil immersion lenses, Use of immersion oil, Calculating the final magnification on the photomicrograph, vibration, The coverslip glass, Photomicroscopy. - [Read Light Microscopy - Microscopes in Cell Biology]

Light Microscopy Techniques - http://www.hei.org/research/aemi/clm.htm

Category: Molecular Imaging: Light Microscopy

Ahmanson Center for Advanced Electron Microscopy and Imaging. Use of Semi-Thin Cryosections for Light Microscopy, Immunolabeling of Cryosections on Glass Slides, Problems with Autofluorescence. House Ear Institute - [Read Light Microscopy Techniques]

Method for automated sequencing for expressed sequence tags from Schistosoma japonicum and/or S. man - http://www.nhm.ac.uk/hosted_sites/schisto/protocols/QIMR_EST.html

Category: RNA Protocols: cDNA Libraries Library

The Queensland Institute for Medical Research (QIMR) lab's method for automated sequencing for expressed sequence tags from Schistosoma japonicum and/or S. mansoni cDNA libraries constructed in the directional vectors lambda ZAP II and UNI ZAP XR. Paul Br - [Read Method for automated sequencing for expressed sequence tags from Schistosoma japonicum and/or S. man]

Mouse Embryonic Fibroblast Culture and Propagation Part II PDF - http://www.wicell.org/uploads/media/Protocols_Part_2_05.pdf

Category: Cell Biology and Cell Culture: ES Stem Cell Biology and Culture: MEF Protocols Mouse Embryonic Fibroblasts

WiCell Reserarch Institute. Count MEF Cells, Trypsinize, Split, Freeze, Thaw, Irradiate, Reconstitute, Plate, Feeder. - [Read Mouse Embryonic Fibroblast Culture and Propagation Part II PDF]

Mouse embryonic stem (ES) cell culture - basic procedures PDF - http://www.molgen.mpg.de/~rodent/ES_protocol.pdf

Category: Cell Biology and Cell Culture: ES Stem Cell Biology and Culture: ES Cell Growth Media and Requirements

Great Procedures. rules for ES cell culture, differentiation of ES cells, ES medium, Thawing, Passaging, Freezing. Mouse embryonic stem (ES) cell culture - basic procedures. Max Planck Institute for Molecular Genetics. Boris Greber. - [Read Mouse embryonic stem (ES) cell culture - basic procedures PDF]

Nick translation for FISH - http://www.sanger.ac.uk/HGP/methods/cytogenetics/nick_translation.shtml

Category: Cytogenetics Protocols: Fluorescent In Situ Hybridization FISH Protocol

Nick translation for FISH. Sanger Institute. - [Read Nick translation for FISH]

Random Labelling DNA for array CGH Protocol - http://www.sanger.ac.uk/HGP/methods/cytogenetics/Labelling.shtml

Category: Cytogenetics Protocols: Array CGH

Random Labelling DNA for array CGH Protocol. Sanger Institute - [Read Random Labelling DNA for array CGH Protocol]

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