Bioinformatics, Protocols, DNA RNA Protein Proteomics
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Mass Spectrometry Protocols, mass spec methods, tandem, MALDI-TOF, identification of proteins and peptides.
@Proteomic Protocols (15) |
| Aminopeptidase M - http://prowl.rockefeller.edu/recipes/nproteas/aminom.htm Aminopeptidase M protocol and properties. PROWL - [Read Aminopeptidase M] |
| Carboxypeptidase-Y C-terminal sequencing - http://prowl.rockefeller.edu/recipes/cproteas/carboxyy.htm Carboxypeptidase-Y C-terminal sequencing and sequencing ladder protocol method. PROWL - [Read Carboxypeptidase-Y C-terminal sequencing] |
| Deamidation in Proteins and Peptides - http://www.ionsource.com/Card/Deamidation/mono0001.htm Deamidation in Proteins and Peptides. Informational page by Glen Teshima. RPLC, HIC, Peptide mapping of proteolytic digests (LC-MS), Protein carboxyl methyltransferase (PIMT). - [Read Deamidation in Proteins and Peptides] |
| Dried droplet Sample Preparation for MALDI - http://prowl.rockefeller.edu/methods/dried.htm Dried droplet Sample Preparation for MALDI.The discovery of this method allowed the application of laser desorption to proteins [2]. Drying a droplet of a protein/matrix solution remains the favorite method of most MALDI practitioners. Protocol for dried - [Read Dried droplet Sample Preparation for MALDI] |
| In-gel digestion of proteins for peptide fingerprint mapping - http://www.bio.vu.nl/vakgroepen/mnb/proteomics/6.in-geldigestion.html Peptide Mapping Analysis Techniques. Dr.Aebersold, Vrije Universiteit Amsterdam - [Read In-gel digestion of proteins for peptide fingerprint mapping] |
| MALDI Matrices - http://www.narrador.embl-heidelberg.de/GroupPages/PageLink/activities/protocols/maldimatrices.html MALDI Matrices. Commonly used MALDI matrices for analysis of peptides, proteins, carbohydrates, and nucleic acids using 337 nm or 355 nm UV lasers. All matrices can be used for sample preparation using the Dried Droplet Method whereas only matrices solubl - [Read MALDI Matrices] |
| MALDI Sample Preparation - Dried Droplet Method - http://web.archive.org/web/20040523162502/http://www.narrador.embl-heidelberg.de/GroupPages/PageLink/activities/protocols/drieddroplet.html Method for sample preparation for MALDI: dried droplet protocol. EMBL Bioanalytical Research Group. Matthias Wilm . - [Read MALDI Sample Preparation - Dried Droplet Method] |
| MALDI Sample Preparation - Fast Evaporation Method - http://www.narrador.embl-heidelberg.de/GroupPages/PageLink/activities/protocols/fastevaporation.html Fast Evaporation Method for MALDI sample preparation protocol. Inserting into MALDI mass spectrometer and acquiring a spectrum. EMBL Bioanalytical Research Group. Wilm. - [Read MALDI Sample Preparation - Fast Evaporation Method] |
| Mass spectrometry analysis and identification of proteins - http://www.healthsystem.virginia.edu/internet/biomolec/mass_spectrometry.cfm Protein sequencing by mass spectrometry. Mass analysis of peptides and proteins. Identification of modifications in proteins. Good information.Univ. Virginia. Dr. Nicholas Sherman - [Read Mass spectrometry analysis and identification of proteins] |
| Mass spectrometry compatible silver staining of gels protocol - http://www.narrador.embl-heidelberg.de/GroupPages/PageLink/activities/protocols/silverstain.html Mass spectrometry compatible silver staining of gels protocol. EMBL Bioanalytical Research Group. Wilm. - [Read Mass spectrometry compatible silver staining of gels protocol] |
| Methanol-Chloroform Precipitation of Proteins - http://www.healthsystem.virginia.edu/internet/biomolec/methanolchloroform.cfm Methanol-Chloroform Precipitation of Proteins. A procedure for precipitating proteins from solution, including detergent solutions, is from Wessel and Flügge (1984). Univ. Virginia. - [Read Methanol-Chloroform Precipitation of Proteins] |
| Millipore's ZipTip Protocol - http://www.millipore.com/publications.nsf/docs/tn072 Millipore's ZipTip Protocol. Intended for purifying and concentrating femtomoles to picomoles of protein, peptide or oligonucleotide samples prior to analysis, providing better data quality. Millipore. - [Read Millipore's ZipTip Protocol] |
| Polycrystalline thin films Sample Preparation Protocol MALDI - http://prowl.rockefeller.edu/methods/thinfilm.htm This method of sample preparation produces a uniform layer of very small crystals on the mass spectrometer's sample stage that are mechanically well adhered to the substrate. It is a variant of the dried droplet method. PROWL - [Read Polycrystalline thin films Sample Preparation Protocol MALDI] |
| Proteomic protocols and Peptide Extraction - http://www.curie.fr/recherche/themes/equipe-protocoles.cfm/id_equipe/310/lang/_gb.htm Colloidal coomassie blue staining, Destaining, Reduction/Alkylation, Peptide extraction For MALDI-MS analysis and For MALDI-MS analysis protocols and methods. Institut Curie Paris. - [Read Proteomic protocols and Peptide Extraction] |
| Protocols for Mass Spectrometry Analysis Preparation - http://www.st-andrews.ac.uk/~bmsmspf/protocols.htm#manual Protocols for Mass Spectrometry Analysis Preparation. Preparing gel slices for PMF or MS/MS , mass spec data interpretation, Submitting proteins in solution, Interpretation of LC-MS/MS data. BMS MASS SPECTROMETRY AND PROTEOMICS FACILITY - [Read Protocols for Mass Spectrometry Analysis Preparation] |
| Seeded films (Vorm-Roepstorff) MALDI Protocol - http://prowl.rockefeller.edu/methods/seeded.htm This sample preparation method is a direct replacement for the dried droplet technique. It produces more uniform samples than the dried-droplet technique and the crystals are better adhered to the sample stage’s surface. MALDI Sample preparation. PROWL - [Read Seeded films (Vorm-Roepstorff) MALDI Protocol] |
| Silver Staining of Gels for Mass Spectrometry - http://www.healthsystem.virginia.edu/internet/biomolec/Silverstains.cfm Silver Staining of Gels for Mass Spectrometry. Desiderio procedure: R.R. Becklin. Univ. Virginia. - [Read Silver Staining of Gels for Mass Spectrometry] |
| Slow crystallization Protocol for MALDI samples - http://prowl.rockefeller.edu/methods/slowcrys.htm The dried-droplet method will fail for samples containing significant concentrations of involatile solvents or high concentrations of salts. PROWL - [Read Slow crystallization Protocol for MALDI samples] |
| Tandem Affinity Purification (TAP) Protocol - http://depts.washington.edu/~yeastrc/ms_tap1.htm Tandem Affinity Purification (TAP) Protocol. Modified from Rigaut et al. 1999. Univ.Washington Yeast Resource Center. - [Read Tandem Affinity Purification (TAP) Protocol] |
| Tips for Sample Preparation for MALDI mass spectrometry - http://www.cfgbiotech.com/proteomics/sample_prep.htm Tips for Sample Preparation for MALDI mass spectrometry. Sample quantity, Solvent, Protein/Peptide sample handling. U. Albany. CFG - [Read Tips for Sample Preparation for MALDI mass spectrometry] |
| Tryptic digestion directly in polyacrylamide gel slices - http://www.healthsystem.virginia.edu/internet/biomolec/ingeldigest.cfm Tryptic digestion directly in polyacrylamide gel slices. A. Shevchenko et al. Univ. Virginia. - [Read Tryptic digestion directly in polyacrylamide gel slices] |
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