Go Back   Science Forums Biology Forum Molecular Biology Forum Physics Chemistry Forum > General Science Forums > Biochemistry Forum > RNA Forum
Register Search Today's Posts Mark Forums Read

RNA Forum RNA Forum. Discuss RNA including mRNA structure and function, rRNA, tRNAs, and the biochemistry of other RNA molecules.


script to scan through a fasta file of miRNA sequences based on particular features

script to scan through a fasta file of miRNA sequences based on particular features - RNA Forum

script to scan through a fasta file of miRNA sequences based on particular features - RNA Forum. Discuss RNA including mRNA structure and function, rRNA, tRNAs, and the biochemistry of other RNA molecules.


Reply
 
LinkBack Thread Tools Display Modes
  #1  
Old 04-25-2012, 10:31 AM
Pipette Filler
Points: 424, Level: 8 Points: 424, Level: 8 Points: 424, Level: 8
Activity: 0% Activity: 0% Activity: 0%
 
Join Date: Dec 2011
Posts: 9
Thanks: 1
Thanked 0 Times in 0 Posts
Question script to scan through a fasta file of miRNA sequences based on particular features



Hi
i have two questions:
1.Is there a way of scanning through a fasta file of about 700 miRNA sequences and classify these sequences based on some features e.g. MFE and A:C mismatch ?

2. with the same fasta file above, how can i use python to read them one by one and assign them as input to RNAfold.exe and display the output result?

hope someone knows what am talking about.
Reply With Quote
  #2  
Old 04-28-2012, 02:38 PM
Pipette Filler
Points: 424, Level: 8 Points: 424, Level: 8 Points: 424, Level: 8
Activity: 0% Activity: 0% Activity: 0%
 
Join Date: Dec 2011
Posts: 9
Thanks: 1
Thanked 0 Times in 0 Posts
Default Re: script to scan through a fasta file of miRNA sequences based on particular featur

please,guys! i need your help. if my questions are not clear enough let me know
Reply With Quote
Reply

Tags
based , bioinformaitcs tools , fasta , features , file , mirna , python , rnafold , scan , script , sequences


Thread Tools
Display Modes

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are On
Pingbacks are On
Refbacks are On

Forum Jump

Similar Threads
Thread Thread Starter Forum Replies Last Post
GNU units and units.dat; Units of Measurement and Unit Conversion James Redford Physics Forum 0 07-31-2005 12:08 PM


All times are GMT. The time now is 10:46 PM.


Powered by vBulletin® Version 3.8.4
Copyright ©2000 - 2014, Jelsoft Enterprises Ltd.
Copyright 2005 - 2012 Molecular Station | All Rights Reserved
Page generated in 0.13403 seconds with 16 queries