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-   -   script to scan through a fasta file of miRNA sequences based on particular features (http://www.molecularstation.com/forum/rna-forum/85211-script-scan-through-fasta-file-mirna-sequences-based-particular-features.html)

rebekka 04-25-2012 10:31 AM

script to scan through a fasta file of miRNA sequences based on particular features
 
Hi
i have two questions:
1.Is there a way of scanning through a fasta file of about 700 miRNA sequences and classify these sequences based on some features e.g. MFE and A:C mismatch ?

2. with the same fasta file above, how can i use python to read them one by one and assign them as input to RNAfold.exe and display the output result?

hope someone knows what am talking about.

rebekka 04-28-2012 02:38 PM

Re: script to scan through a fasta file of miRNA sequences based on particular featur
 
please,guys! i need your help. if my questions are not clear enough let me know :(


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