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BLAST question: Protein sequence alignment

BLAST question: Protein sequence alignment - Protocols and Methods Forum

BLAST question: Protein sequence alignment - Post Any Protocol, Method, Technique, Procedure or Tips / Troubleshooting for any Molecular Biology Technique.


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Old 06-07-2010, 11:47 PM
Pipette Filler
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Default BLAST question: Protein sequence alignment




I have a short peptide of about 30 amino acids that I would like to BLAST against protein databases, pentapeptide by pentapeptide (or hexapeptide, heptapeptide etc) to look for matching sets (eg cleavage sites etc) . Other than doing this by hand, is there a BLAST setting for iterating this, and from which server ?

Thanks very much for any help

Chris
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alignment , blast , protein , question , sequence , sequence alignment , sequence analysis


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