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Sequence alignment from BLAST output

Sequence alignment from BLAST output - Protocols and Methods Forum

Sequence alignment from BLAST output - Post Any Protocol, Method, Technique, Procedure or Tips / Troubleshooting for any Molecular Biology Technique.


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Old 09-13-2008, 05:46 AM
ab
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Default Sequence alignment from BLAST output



Dear all,

Sorry about the silly question. Is there any website where one can
BLAST microbial genomes with a protein sequence, select a subset from
the BLAST output and make a multiple sequence alignment (with
CLUSTAL_W or equivalent) without the need to individually copy/paste
every selected sequence into a separate file ?

Thanks very much in advance.

Best,

Anirban.
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  #2  
Old 09-13-2008, 07:59 PM
Jayakumar, R
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Default Sequence alignment from BLAST output

If there is, you should find a link from [Only registered users see links. ] or
[Only registered users see links. ], two of the largest repositories of molecular tools
on the web. But I wish there were tools which will do all our work
while we relax with a martini in front of the fireplace, but
unfortunately, some amount of work is required. :-))
Jay


-----Original Message-----
From: [Only registered users see links. ]
[mailto:[Only registered users see links. ].indiana.edu] On Behalf Of ab
Sent: Saturday, September 13, 2008 1:46 AM
To: [Only registered users see links. ]
Subject: Sequence alignment from BLAST output

Dear all,

Sorry about the silly question. Is there any website where one can BLAST
microbial genomes with a protein sequence, select a subset from the
BLAST output and make a multiple sequence alignment (with CLUSTAL_W or
equivalent) without the need to individually copy/paste every selected
sequence into a separate file ?

Thanks very much in advance.

Best,

Anirban.
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