Go Back   Science Forums Biology Forum Molecular Biology Forum Physics Chemistry Forum > Molecular Research Topics Forum > Protocols and Methods Forum
Register Search Today's Posts Mark Forums Read

Protocols and Methods Forum Post Any Protocol, Method, Technique, Procedure or Tips / Troubleshooting for any Molecular Biology Technique.


Analysis of Next Generation Sequencing data

Analysis of Next Generation Sequencing data - Protocols and Methods Forum

Analysis of Next Generation Sequencing data - Post Any Protocol, Method, Technique, Procedure or Tips / Troubleshooting for any Molecular Biology Technique.


Reply
 
LinkBack Thread Tools Display Modes
  #1  
Old 07-30-2008, 09:41 AM
Klaus May
Guest
 
Posts: n/a
Default Analysis of Next Generation Sequencing data



Dear Group members,

a recent Science publication:
"A Global View of Gene Activity and Alternative Splicing by Deep
Sequencing of the Human Transcriptome"
[Only registered users see links. ]

demonstrates capabilities of two products from Genomatix
[Only registered users see links. ]

Genomatix delivers powerful turnkey solutions downstream of Next
Generation Sequencing (NGS) devices, following the Genomatix tradition
of highest scientific standards and cutting edge technology.

Genomatix solutions work with data from all available NGS system
providers: Illumina´s Genome Analyzer (Solexa), Roche (454), The SOLiD
TM System by Applied Biosystems, and HeliScope by Helicos.

Genomatix Mapping Station (GMS) delivers ultra-fast mapping of
sequence reads of any length above 9 base pairs. Ten million typical
NGS reads of variable lengths are perfectly and uniquely mapped to the
human genome in less than 30 minutes. GMS is flexible and allows for
any number of indels and point mutations, delivering an uniqueness
measure for each mapped read. It takes the NGS system internal error
checking into account and detects new SNPs. Cutting edge technology
identifies splice junction tags for advanced transcriptome analysis.

Genomatix Genome Analyzer (GGA) is the complete solution for ChIP-seq
and transcriptome analysis downstream of mapping the NGS system reads
to the genome with the Genomatix Mapping Station, or any other
technology. Terabytes of annotation data complement the results from
the NGS experiment and expand by optional integration with each new
sequencing run to a customized genome database. Easy-to-use
visualization and genome wide correlations allow for meta-analysis of
all kind of data-sets.

Integrated comparative genomics procedures allow for phylogenetical
conservation analysis of findings.

Genome wide transcription factor analysis, gene regulatory region
analysis, regulatory SNPs, epigenetic modification analysis, DNase-
seq, digital gene expression with normalization and quantification of
expression values… all required data and hardware in one technology
unit at your lab. GGA is operated through a comprehensive easy-to-use
web based interface for the biologist, plus features full data
structure access and command line driven procedures for the bio-
informatician for easy integration into own high-throughput pipelines.
Reply With Quote
Reply

Tags
analysis , data , generation , sequencing


Thread Tools
Display Modes

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are On
Pingbacks are On
Refbacks are On

Forum Jump

Similar Threads
Thread Thread Starter Forum Replies Last Post
Human Cytome Project - Update 24 Jan. 2005 Peter Van Osta Cell Biology and Cell Culture 1 08-01-2010 02:18 PM
Trainings/Projects on Bioinformatics,Molecular Biology,MicroBiology,DrugDesigning and SAS Programming at Global Institute of Biotechnology Global Institute of Biotechnology Protocols and Methods Forum 0 11-28-2007 12:31 PM
qPCR NEWSLETTER - October 2006 Editor www.Gene-Quantification.info Protocols and Methods Forum 0 10-26-2006 12:25 PM
Human Cytome Project - How to explore - Update 19 April 2005 Peter Van Osta Cell Biology and Cell Culture 0 04-19-2005 07:10 AM
Human Cytome Project - Update 6 Jan. 2005 Peter Van Osta Cell Biology and Cell Culture 0 01-06-2005 11:18 AM


All times are GMT. The time now is 02:39 AM.


Powered by vBulletin® Version 3.8.4
Copyright ©2000 - 2014, Jelsoft Enterprises Ltd.
Copyright 2005 - 2012 Molecular Station | All Rights Reserved
Page generated in 0.15608 seconds with 16 queries