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#1
02-04-2006, 12:33 AM
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 Very large rDNA multiple sequence alignments Hi, At present I am trying to perform multiple alignments of very large files (<1000 sequences) of 16s rDNA from individuals within the same animal phyla. I am finding that programs using the clustal platform cannot handle this. The end application is not phylogenetic so I am relatively unconcerned about ambiguous alignment within and around indels. Does anyone know of a program that can handle alignments of this size in a windows operating system? Glenn D. UTAS  |
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#2
02-11-2006, 06:25 AM
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| Very large rDNA multiple sequence alignments Hi, At present I am trying to perform multiple alignments of very large files (<1000 sequences) of 16s rDNA from individuals within the same animal phyla. I am finding that programs using the clustal platform cannot handle this. The end application is not phylogenetic so I am relatively unconcerned about ambiguous alignment within and around indels. Does anyone know of a program that can handle alignments of this size in a windows operating system? TCOFFEE. |
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| alignments , large , multiple , rdna , sequence |
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