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BioToolKit 300: 45 frequently-used software for bioscientists

BioToolKit 300: 45 frequently-used software for bioscientists - Protocols and Methods Forum

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Old 07-02-2003, 11:30 PM
Chang Zhu
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Default BioToolKit 300: 45 frequently-used software for bioscientists



BioToolKit is a collection of 45 frequently-used
software for biomedical scientists. Most software
in the Kit have been tested online by thousands
of users. With the help of these software, you
can get better experimental results and save time.

Please visit [Only registered users see links. ] for
online demo and download.


Please visit
[Only registered users see links. ]
to download full-functional trail.

Some of the software in the Kit can also be purchased
separately.

------------------------------------------------------
Antibody Abie Pro 3.0: Peptide antibody design.
Reduce background cross-reactions by
avoiding over-represented sequences in a
genome.
Calculator Centrifugation: Centrifugation force/speed
conversion.
Calculator Clinical: calculator Date/time, body mass,
surface area.
Calculator Units: Units conversions.
Genetics Log Odds Ratio: Convert between (log) odds
ratio and risk factor.
Genetics RF Calculate: map distance from
recombination.
HTP Godlist Manager 2.0: Batch manipulation of
text and sequences.
HTP Heatmap Viewer 1.4: Heatmap display of
high-throughput data.
HTP Microhelper 1.02: Merging microarray
datasets, checking data integrity,
filtering noises, and normalizing data.
Lab Tools Lab Inventory: Small inventory database.
Lab Tools LabLabel 1.02: Print barcodes,
stock/mail/eppendorf labels.
Lab Tools PeptideBase 1.4: Searchable database of
peptides.
Lab Tools PrimerBase 2.0: Searchable database of
primers.
Molecular Compatible Ends: Find restriction enzymes
with compatible ends.
Molecular Extinction Coefficient: Protein extinction
coefficient.
Molecular Format: Sequence Format DNA/Protein
sequences.
Molecular Initiation: Translation initiation signal
for 2000 species.
Molecular MW: Molecular weight for
DNA/protein/chemicals.
Molecular Master Mix: Calculate components for a
master cocktail.
Molecular Molar Concentration: Molar concentration
related calculations.
Molecular OneThree: Converts between single- and
three-letter protein codes.
Molecular Randomizer 1.02: Randomize DNA/protein
sequences.
Molecular Recipe: Calculator Calculator for 100
common recipes.
Molecular Reverse/Complement: DNA reverse,
complement, or reverse/complement.
Molecular Spectrometer Sample: concentration from
spectrometer reading.
Molecular Translator Translation of DNA sequences.
PCR Primo: Primo is a suite of PCR primer
design software. It reduces background
random primer binding, eliminates
primer-primer dimers, and selects primers
with consistent composition and melting
temperature.
PCR Primo Degenerate 3.4: Standard and
degenerate PCR primer design.
PCR Primo Diverse 3.4: Amplify diverse regions
of a gene family.
PCR Primo MSP 3.4: Methylation specific PCR and
bisulfate sequencing.
PCR Primo Multiplex 3.4: Standard and multiplex
PCR primer design.
PCR Primo Optimum 3.4: Optimize codon usage and
gene synthesis.
PCR Primo Pro 3.4: Standard PCR primer design.
Batch mode.
PCR Primo Profile 3.4: Degenerate primers for
profiling 10-100s of genes.
PCR Primo Random 3.4: Random primers for RAPD,
AP-PCR, and RAP-PCR.
PCR Primo Unique 3.4: Uniquely amplify one gene
in a set/family.
Statistics BioDataFit 1.02: Data fitting for
dose-response, ligand-binding, enzyme
kinetics, and growth inhibition. EC50
calculation using four-parameter or
sigmoidal model.
Statistics Chi-square: Chi-square test.
Statistics Correlation: Linear and non-linear
correlation coefficients.
Statistics Probability: Poisson and Binomial
probability distribution.
Statistics SVM Classifier: Train to classify multiple
classes.
Statistics SVM SeqClassifier: Train to recognize
sequence patterns.
Statistics Sample Size: Estimate sample sizes needed.
Statistics t-test: t-test calculator.
Statistics z-test: z-test. Normal distribution
calculator.
Teaching Grade Book 1.02: Grade book. Calculates
final letter scores.
Testing Primo Melt 3.4: Primer design for DGGE or
TGGT.
Testing SVM RNAi: siRNA design using SVM learning
program. Eliminate siRNAs
with multiple targets.
-------------------------------------------------------

Thanks.


Chang Bioscience
125 Cambon Drive #6H
San Francisco, CA 94132
Fax: 415 680 1560
Phone: 415 377 7892
Email: [Only registered users see links. ]
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