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| I am trying to understand how protein secondary prediction is working. I know that each time you choose a number of window size to work with. Lets say i choose number 5. so i will have from my whole protein ...GHGVV... right? i encode each of them as in 1-20 binary vectors. that is, each amino acid is represented by a vector. G = [ 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0]... for example. now the thing that i don't understand, is how alpha-helices are classified, using a simple perceptron. how can I know that G, or H, or V is an alpha-helix just by classifying the protein into 1-20 vectors? thx for the help! |
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| perceptron , prediction , protein , secondary , simple |
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