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| Some type of chromatography/mini-chromatography method should work too. For example, couple the peptide or target protein to the resin, and then incubate the other molecule with the resin conjugated to the peptide or target protein. There are various systems that can be used to conjugate the peptide or target protein to the resin. After incubation, wash several times, elute (with the denaturing detergent SDS, for example), and then perform a western blot or Coomassie blue staining of the SDS-PAGE. If you can detect both the target protein and the peptide in the same eluted fraction, they are likely binding to each other. |
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