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Protein Science Post Questions and Discuss Protein Structure and Function, Protein Localization etc.. Please do not post Proteomic questions here, there is a Proteomic Forum below.

Protein Science
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Questions about the coarse-grained model

Protein Science

Post Questions and Discuss Protein Structure and Function, Protein Localization etc.. Please do not post Proteomic questions here, there is a Proteomic Forum below.



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Old 09-25-2007, 04:43 AM
Pipette Filler
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Question Questions about the coarse-grained model

I'm recently doing some research work employing the coarse-grained model with 5~6 beads for each residue and I have some questions:
By regarding the side chain as a globular bead, should the center of the bead be placed on the mass center of the side chain or simply on the C-beta atom? How to determine the radius of the bead representing the side chain?
Thanks.
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