How to compare multiple pdb's according to secondary struc+torsionangles
I have approximately 40 to 50 pdb structures of homologous proteins
that I want to compare.
I am interested on plotting the sequence vs (secondary
structure/torsion_angles/accessibility/hydrophobicity). I have tried
software like VMD and WHATIF to do such plots (or part of them) but I
am getting problems when the number of structures compared is getting
close to 10...
Does anybody knows a software/script/webpage that allows such
comparison of such number of pdb ?
How to compare multiple pdb's according to secondarystruc+torsion angles
Am 05.10.2009, 06:13 Uhr, schrieb Afonso Duarte <[Only registered users see links. ]>:
DeepView (formerly the Swiss PDB viewer, [Only registered users see links. ]) can
superimpose structures for optical comparison. It can also save a list of
phi/psi values (Save - Ramachandran plot) for each protein as text file.
You could then enter these values into a spreadsheet for further analysis,
or write your own software to do further evaluation. It may be necessary
to align the proteins first with Clustal, so that you compare like with