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Coarse functional protein classification

Coarse functional protein classification - Protein Forum

Coarse functional protein classification - Protein Forum


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  #1  
Old 09-05-2008, 10:33 PM
Oznur Tastan
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Default Coarse functional protein classification



Hi, is anyone aware of a database which provides functional protein
classification in broad terms, for example "kinases", "receptors" would be
two protein classes. I've just checked the root terms of InterPro, it was
still too specific for my task.


thanks
-
oznur
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  #2  
Old 09-06-2008, 03:12 PM
Nick Theodorakis
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Default Coarse functional protein classification

On Sep 5, 5:33 pm, "Oznur Tastan" <[Only registered users see links. ]> wrote:

Many receptors are also kinases, you know.

There is the EC enzyme nomenclature for classifying enzymes by the
type of reactions they catalyze, but it's only for enzymes and may
not be exactly what you are looking for.

Nick

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  #3  
Old 09-06-2008, 06:31 PM
Oznur Tastan
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Default [Protein-analysis] Re: Coarse functional protein classification

that is true, there is the receptor tyrosine kinases. thanks for the EC
pointer, but it would been great if there were some nomenclanture that
covers the whole human proteome.
thanks
oznur

On Sat, Sep 6, 2008 at 11:12 AM, Nick Theodorakis <
[Only registered users see links. ]> wrote:




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oznur
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  #4  
Old 09-12-2008, 02:19 PM
Dr Engelbert Buxbaum
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Default Coarse functional protein classification

Am 05.09.2008, 18:33 Uhr, schrieb Oznur Tastan <[Only registered users see links. ]>:


Enzymes are classified by the 6 fundamental reactions they may perform by
the Enzyme Commission (kinases are transferases). You would then have to
further classify non-enzyme proteins, e.g. receptors, structural proteins,
hormons and so on.
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