Go Back   Science Forums Biology Forum Molecular Biology Forum Physics Chemistry Forum > Molecular Research Topics Forum > Protein Science > Protein Forum
Register Search Today's Posts Mark Forums Read

Protein Forum Protein Forum


Domain binding motifs database?

Domain binding motifs database? - Protein Forum

Domain binding motifs database? - Protein Forum


Reply
 
LinkBack Thread Tools Display Modes
  #1  
Old 10-15-2007, 01:25 PM
Oznur Tastan
Guest
 
Posts: n/a
Default Domain binding motifs database?



Hi all,
Is anyone aware of any database or list that includes the known domain
binding motifs. By domain binding motifs, I mean the protein sequence
motifs on the binding site to a protein domain. Like the PXXXP motif
observed in SH3 binding domains.

I appreciate your help.
--
oznur
Reply With Quote
  #2  
Old 10-16-2007, 09:05 AM
Philipp Pagel
Guest
 
Posts: n/a
Default Domain binding motifs database?

Oznur Tastan <[Only registered users see links. ]> wrote:

Although not really a database, Tony Pawson provides useful information
on such domain-motif interactions on his web site:

[Only registered users see links. ]

cu
Philipp

--
Dr. Philipp Pagel Tel. +49-8161-71 2131
Lehrstuhl f. Genomorientierte Bioinformatik Fax. +49-8161-71 2186
Technische Universität München
[Only registered users see links. ]
Reply With Quote
  #3  
Old 10-16-2007, 10:06 AM
Philipp Pagel
Guest
 
Posts: n/a
Default Domain binding motifs database?

Philipp Pagel <[Only registered users see links. ]> wrote:

Oh - and I forgot to mention DOMINO - a nice database of domain motif
interactions from the Cesareni group:

[Only registered users see links. ]

cu
Philipp

--
Dr. Philipp Pagel Tel. +49-8161-71 2131
Lehrstuhl f. Genomorientierte Bioinformatik Fax. +49-8161-71 2186
Technische Universität München
[Only registered users see links. ]
Reply With Quote
  #4  
Old 10-16-2007, 07:22 PM
Oznur Tastan
Guest
 
Posts: n/a
Default [Protein-analysis] Re: Domain binding motifs database?

Thanks! I'll have a look at those.
cheers,
oznur
On 10/16/07, Philipp Pagel <[Only registered users see links. ]> wrote:



--
oznur
Reply With Quote
Reply

Tags
binding , database , domain , motifs


Thread Tools
Display Modes

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are On
Pingbacks are On
Refbacks are On

Forum Jump

Similar Threads
Thread Thread Starter Forum Replies Last Post
Protein domain database? Ed Siefker Protocols and Methods Forum 0 12-12-2008 06:11 PM
Protein domain database? Suresh Kumar Protocols and Methods Forum 0 12-11-2008 06:22 PM
Protein domain database? Ed Siefker Protocols and Methods Forum 1 12-11-2008 08:23 AM
PLACE (plant cis-element motif) database: final release Kenichi Higo Arabidopsis and Plant Biology 0 02-01-2007 11:56 AM
TF Binding site database J. Mcelwee C Elegans Forum 0 07-13-2004 03:55 PM


All times are GMT. The time now is 05:12 AM.


Powered by vBulletin® Version 3.8.4
Copyright ©2000 - 2014, Jelsoft Enterprises Ltd.
Copyright 2005 - 2012 Molecular Station | All Rights Reserved
Page generated in 0.12791 seconds with 16 queries