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| I have characterised the activity of a new enzyme and as the genome has been sequenced I have been looking at the surrounding genes. Now the surrounding genes are all interrelated in a degradation pathway ie Gene 1 (predicted to act on known substrate) converts A to B Gene 2 (predicted to act on known substrate) converts B to C Gene 3 (my enzymes) I know from experiments converts C to D Gene 4 (enzyme type predicted, but not substrate it acts on) (D to E) Gene 5 (predicted to act on substrate) to convert E to F Is it scientifically correct to infer the substrate specificity (ie gene 4 acts on D) given the interrelationship of the other predicted genes and from what I know about my enzyme? The results of a blast search of gene 4 shows mainly the broad enzyme type (ie aldehyde dehydrogenase), although there is one high hit E=0 that is predicted to be a specific enzyme which acts on the product (aldehyde) of my enzyme. As I know my enzyme is upregulated when I add C and I know the products of my enzyme, am I able to imply that this degradation pathway (that occurs in 1 other bacteria) also occurs in my bacteria? Or is proof required by scientific experiments? Last edited by abfmdf; 10-18-2009 at 05:46 PM. |
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