Go Back   Science Forums Biology Forum Molecular Biology Forum Physics Chemistry Forum > Molecular Research Topics Forum > Molecular Biology Articles and Protocols
Register Search Today's Posts Mark Forums Read

Molecular Biology Articles and Protocols Post Molecular Biology and science Protocols, Reviews, and Articles Forum. You can be the author!


Intersect two microarray data or a microarray data with a gene list

Intersect two microarray data or a microarray data with a gene list - Molecular Biology Articles and Protocols

Intersect two microarray data or a microarray data with a gene list - Post Molecular Biology and science Protocols, Reviews, and Articles Forum. You can be the author!


Reply
 
LinkBack Thread Tools Display Modes
  #1  
Old 07-11-2011, 04:01 AM
Pipette Filler
Points: 17, Level: 1 Points: 17, Level: 1 Points: 17, Level: 1
Activity: 0% Activity: 0% Activity: 0%
 
Join Date: Jul 2011
Posts: 2
Thanks: 0
Thanked 0 Times in 0 Posts
Default Intersect two microarray data or a microarray data with a gene list



Dear colleagues,

We would like to introduce a new tool called “CU-DREAM” for intersecting two microarray datasets. CU-DREAM compares the datasets of two microarray experiments with different conditions to determine if the two conditions share genome wide gene regulation pathway. CU-DREAM is an effective tool for the pre-screening of drugs, substances or environmental insults or the identification of the genetic changes that are associated with pathological conditions.
CU-DREAM(X) can intersect a GSE dataset with “a gene set.” This program is designed to find the association between up or down regulation of certain GSE microarray experiments and a group of certain genes.

All materials (executable file, user manual, examples) can be downloaded.

Please find CU-DREAM by google.

Please reference CU-DREAM and CU-DREAM(X) as follow.

Aporntewan C, Mutirangura A. Connection Up- and Down-Regulation Expression Analysis of Microarrays (CU-DREAM): A physiogenomic discovery tool, Asian Biomedicine, Vol. 5 No. 2, pp. 265-270, April 2011. DOI: 10.5372/1905-7415.0502.034.

Aporntewan C, Phokaew C, Piriyapongsa J, Ngamphiw C, Ittiwut C, Tongsima S, Mutirangura A (2011) Hypomethylation of Intragenic LINE-1 Represses Transcription in Cancer Cells through AGO2. PLoS One 6 (3):e17934. doi:10.1371/journal.pone.0017934

Best Regards,

Prof. Apiwat Mutirangura, Center for Excellence in Molecular Genetics of Cancer and Human Diseases, Department of Anatomy, Faculty of Medicine, Chulalongkorn University, Bangkok 10330, Thailand.

Asst.Prof. Chatchawit Aporntewan, Department of Mathematics, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand.
Reply With Quote
Reply

Tags
data , dna methylation , gene , genomics , intersect , list , microarray , microarraydata , transcriptomics


Thread Tools
Display Modes

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are On
Pingbacks are On
Refbacks are On

Forum Jump

Similar Threads
Thread Thread Starter Forum Replies Last Post
Human Cytome Project - Update 24 Jan. 2005 Peter Van Osta Cell Biology and Cell Culture 1 08-01-2010 02:18 PM
New Saccharomyces Sequences 11/27/04 Mike Cherry Yeast Forum 0 11-29-2004 12:39 AM
New Saccharomyces Sequences 09/08/04 SGD Sequences Yeast Forum 0 09-13-2004 10:07 PM
New Saccharomyces Sequences 08/11/04 SGD Sequences Yeast Forum 0 08-12-2004 12:26 AM
New Saccharomyces Sequences 05/19/04 SGD Sequences Yeast Forum 0 05-23-2004 04:06 PM


All times are GMT. The time now is 12:35 AM.


Powered by vBulletin® Version 3.8.4
Copyright ©2000 - 2014, Jelsoft Enterprises Ltd.
Copyright 2005 - 2012 Molecular Station | All Rights Reserved
Page generated in 0.16449 seconds with 16 queries