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Comparison of microarray data for similarities in expression profiles

Comparison of microarray data for similarities in expression profiles - Microarrays Forum

Comparison of microarray data for similarities in expression profiles - Microarray Forum. Discuss array technology and Gene Chips. DNA microarray and Protein arrayit forums.


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  #1  
Old 02-14-2011, 11:39 AM
Pipette Filler
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Default Comparison of microarray data for similarities in expression profiles



I have data from few microarray experiments that differ in stimulating agents. I wolud like to compare the differential expression profiles to get similarities and differences between the profiles.
Does anybody know tool for comparison of microarray data to search for similarities in expression profiles.
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Old 03-13-2011, 04:28 PM
Pipette Filler
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Default Re: Comparison of microarray data for similarities in expression profiles

which data u have is it illumina or any othher

if it is illumina data use genome studio expression module. if it is from other platform sorry to say i dont have much knowledge on them
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Old 03-16-2011, 12:33 PM
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Default Re: Comparison of microarray data for similarities in expression profiles

I have OneArray from Phalanxbio
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Old 03-18-2011, 09:52 AM
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Default Re: Comparison of microarray data for similarities in expression profiles

Did you try Array studio?
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Old 03-23-2011, 08:06 AM
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Default Re: Comparison of microarray data for similarities in expression profiles

I found MultiExperiment Viewer (MeV)
www(dot)tm4(dot)org
It looks quite promising, but thanks!
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Old 07-18-2011, 09:09 AM
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Default Re: Comparison of microarray data for similarities in expression profiles

Hi,
Is anybody knows how I can make cluster with Microarray data with R, or do you know any good R packages for Microarray analysis?
Thanks
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