How to get fold changes from 1wanova Ttest

yeaster · #1 (**permalink**) 08-08-2007, 12:18 AM

I have a question regarding microarray analysis.
I have done an experiment with 18 arrays, 6 conditions each in triplicates. All of my samples have the same control DNA. I used Genespring software to compare the groups of triplicates to one-another, as I do not care about the folds between sample and control within the replicates, but I need fold changes between two groups of triplicates. 1 way ANOVA t-test gives me list of genes up and downregulated between two groups, but no fold changes, it gives p-value instead.
Could you help me in solving this problem? Is there a software that will give me fold changes?

Thank you for your time

yeaster · #2 (**permalink**) 09-27-2007, 12:59 PM

I have the solution for my problem. After long search the software that can do it and does not cost $$$$$ is Genowiz. It will also give you all the stats behind it.