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Discontinuous denaturing PAGE of DNA oligonucleotides

Discontinuous denaturing PAGE of DNA oligonucleotides - Forum Biologie

Discontinuous denaturing PAGE of DNA oligonucleotides - Forum Biologie. Germany German Biology Forums.


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Old 04-05-2004, 02:57 PM
Giulio Casi
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Default Discontinuous denaturing PAGE of DNA oligonucleotides



Hello everybody,

I have to run PAGE of few oligonucleotides under denaturing conditions, and
I am facing few problems:

1- The bands look quite fat
2- The run time is quite high (>3h)

The exact conditions I am using are:

1- DNA 12-mer
2- 300 V
3- 24 % Polyacrylamide homogeneous gel; 8M urea; 1x TBE
4- 15 cm gel lenght
5- Loading Buffer: 70% Formamide 30% Bromophenolblue

I tried to make a discontinuous gel (4% and then 24%) but it resulted in a
thikker band.

Did anybody of you ever run a discontinuous gel? Does anyone know a possible
solution in order to have thinner bands, and shorter run times?
I thank you all in advance for your help

Sincerely,
Giulio Casi

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