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		<title>Molecular Biology Forum Life Science Forums - Omics and Genomics Forum</title>
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		<description>Discuss and post questions about Genomics, Proteomics, Drug discovery, and Interactome research.</description>
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			<title>Implying activity of other genes</title>
			<link>http://www.molecularstation.com/forum/omics-genomics-forum/70987-implying-activity-other-genes.html</link>
			<pubDate>Sun, 18 Oct 2009 17:42:45 GMT</pubDate>
			<description>I have characterised the activity of a new enzyme and as the genome has been sequenced I have been looking at the surrounding genes.  
 
Now the...</description>
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<div>I have characterised the activity of a new enzyme and as the genome has been sequenced I have been looking at the surrounding genes. <br />
<br />
Now the surrounding genes are all interrelated in a degradation pathway ie <br />
<br />
Gene 1 (predicted to act on known substrate) converts A to B <br />
Gene 2 (predicted to act on known substrate) converts B to C <br />
Gene 3 (my enzymes) I know from experiments converts C to D <br />
Gene 4 (enzyme type predicted, but not substrate it acts on) (D to E) <br />
Gene 5 (predicted to act on substrate) to convert E to F <br />
<br />
Is it scientifically correct to infer the substrate specificity (ie gene 4 acts on D) given the interrelationship of the other predicted genes and from what I know about my enzyme? <br />
<br />
The results of a blast search of gene 4 shows mainly the broad enzyme type (ie aldehyde  dehydrogenase), although there is one high hit E=0 that is predicted to be a specific enzyme which acts on the product (aldehyde) of my enzyme. <br />
<br />
As I know my enzyme is upregulated when I add C and I know the products of my enzyme, am I able to imply that this degradation pathway (that occurs in 1 other bacteria) also occurs in my bacteria?  Or is proof required by scientific experiments?</div>


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