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Flymine version 18.0 released.

Flymine version 18.0 released. - Drosophila Forum

Flymine version 18.0 released. - Drosophila melanogaster Forum. Discuss and post questions about FlyBase, Drosophila cloning, fruit fly gene crosses expression and analysis.


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Old 07-21-2009, 10:48 AM
Rachel Lyne
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Default Flymine version 18.0 released.



We have released version 18.0 of FlyMine ([Only registered users see links. ])

In this release data from FlyBase has been updated to release
FB2009_06 and orthologue data from TreeFam ([Only registered users see links. ]) has been
added. FlyMine now includes orthologue data from both TreeFam and
Inparanoid ([Only registered users see links. ]) - see below
for some example template queries which allow you to choose which of
these datasources you want to use. In addition, orthologues between
/D. melanogaster/ and other /Drosophila/ species now come directly from
FlyBase (gene_orthologs_fb_2009_06.tsv.gz) rather than the original
Clark-Eisen analysis (PMID: 17994087) - see below for a template query
to access this data. Many other data sources have been updated to the
latest versions.

For a list of all changes see
[Only registered users see links. ]
For a full list of data sources see
[Only registered users see links. ]
For all types of help and feedback email [Only registered users see links. ]


Accessing orthologue data in FlyMine:


The following templates allow you to search for orthologues and
paralogues generated by either Inparanoid or TreeFam:

Show the predicted orthologues and paralogues between two organisms:
[Only registered users see links. ]

For a specified gene, show all predicted orthologues and paralogues:
[Only registered users see links. ]


To search for orthologues between /D. melanogaster/ and the other
/Drosophila/ species use the following template:
[Only registered users see links. ]


Further templates are available on the FlyMine website.



The FlyMine Team


- About FlyMine -
FlyMine is an integrated database of genomic, expression and protein
data from Drosophila, Anopheles and C. elegans. As an integrated
resource it is possible to run data mining queries that span domains of
biological knowledge. FlyMine is a freely available resource.
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