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| ChIP Chromatin Immunoprecipitation Forum Chromatin Immunoprecipitation Forum. Discuss, chat about, and post questions about the ChIP assay, in the ChIP forum. Includes troubleshooting, protocols, buffer preparation, and more. |
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#1
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| Hi, does sonication alter the DNA, aside from becoming fragmented? So that there could occur problems with procedures, that normally work on isolated DNA? |
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#2
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| What procedure are you trying to do? Sonication applies energy to DNA so it vibrates and snaps. Where it snaps is random, it may leave sticky ends or blunted ends. I'm not aware of any information that suggests sonication can change the properties of DNA at a fundamental level. High power sonication and excessive heat (which can be generated during the procedure) can however alter protein conformation - could your problem relate to the presence of proteins on DNA rather than the DNA itself, or are you sonicating pure DNA? |
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| Thread | Thread Starter | Forum | Replies | Last Post |
| Centrifuge after sonication | halfro22 | Western Blot Forum | 1 | 10-09-2012 01:39 PM |
| Protein disruption by sonication? | naddel | ChIP Chromatin Immunoprecipitation Forum | 0 | 07-23-2009 01:33 PM |
| ChIP Assay Sonication Problems | IoDiNE | ChIP Chromatin Immunoprecipitation Forum | 3 | 02-17-2009 01:12 PM |
| Sonication of tributyrin with media chang color to milky | muhammad yasir | Protocols and Methods Forum | 1 | 04-07-2007 02:08 PM |
| How to use sonication for transformation? | nguyen minh hung | Arabidopsis and Plant Biology | 0 | 07-06-2006 06:04 PM |