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newbie - looking for consensus sequence in promoter

newbie - looking for consensus sequence in promoter - Bioinformatics

newbie - looking for consensus sequence in promoter - Have questions about bioinformatic tools or databases? Post questions here. Discuss and post interesting bioinformatics information.


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Old 10-14-2008, 09:10 PM
Pipette Filler
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Default newbie - looking for consensus sequence in promoter



hello all, i have been given the task of looking for a TF binding site in the promoters of different genes in different species

what types of programs are there that can handle the fact that of the six nucleotides, two of them can be different types of nucleotides
(i.e. A/G G G/T TCA)

thanks for any help you can give me!
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Old 11-28-2008, 05:27 PM
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Default Re: newbie - looking for consensus sequence in promoter

Even I a newbie in Bioinformatics and you question seem to be interesting to start...
Can any body help us???
Let me try the problem with using blast...
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Old 11-28-2008, 05:39 PM
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Default Re: newbie - looking for consensus sequence in promoter

Hai, You can write a program in perl and find it by giving the gene sequence....
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