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codon usage optimization

Bioinformatics

Have questions about bioinformatic tools or databases? Post questions here. Discuss and post interesting bioinformatics information.



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  #1 (permalink)  
Old 06-13-2006, 12:04 PM
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Default codon usage optimization

HI
is any one of you has used the software of optimized codon usage (to make the usage of codon according to organism in which we want to express the gene to maximize its product), if yes and that is also available or any one of you have that software then send the software to me via e.mail.
i shall be very thank ful to you.
regards

aftab
aftabac@yahoo.com
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  #2 (permalink)  
Old 06-13-2006, 09:23 PM
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Talking Re: codon usage optimization

Quote:
Originally Posted by aftabac
HI
is any one of you has used the software of optimized codon usage (to make the usage of codon according to organism in which we want to express the gene to maximize its product), if yes and that is also available or any one of you have that software then send the software to me via e.mail.
i shall be very thank ful to you.
regards

aftab
aftabac@yahoo.com
Hey Afta!

this may be of use to you
http://bioinfo.hr/research/inca/
http://bioinfo.hr/research/inca/inca-registration/


Also see these examples:
http://www.genscript.com/codon_opt.html
http://www.dnatwopointo.com/commerce/misc/opt.jsp

Molecular Biology/Gene Design Tools

* Common Restriction Enzyme Sites
* Restriction Enzyme Map Analysis
* Genetic Code Table
* Commonly Used Codon Frequency Tables

Last edited by Urdu1; 06-13-2006 at 09:35 PM.
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Old 06-13-2006, 09:26 PM
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Default Re: codon usage optimization

Codon Usage Bioinformatic Tools Online:

Codon Usage Database


Correspondence Analysis of Codon Usage


Codon Tree
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Old 08-12-2006, 05:08 PM
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Default Re: codon usage optimization

Try BioInfoMan at http://www.bioinfoman.com/. I used it. It is a nice and free program online.

Good luck!
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