AutoDock 3.0

[raj]

Dear All

Greetings.

I am Raj doing PhD in Madras University, Chennai, India. Im new to this field and to this forum.

Im doing molecular docking studies using Autodock 3.0 software for my research work.

But Im having some doubts in fixing up the Torisons, Grid maps and in the interpretation of the AutoDock results. Could anyone, Plz tell me on wht basis we have to fix up the torsions in ligand and wht parameters we have to look up for fixing up the grid box in macromolecule? I am using 25 residue peptide as ligand and Immunoglobulin as macromolecule.

I would be very glad if someone list out, wht and all i hv to look up in the DLG file (final docked output) to analzye the docking results.

Awaiting for the helpful reply to proceed further.

Thanks.

Regards

Raj