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similarity matrix of sequence alignment

similarity matrix of sequence alignment - Bioinformatics

similarity matrix of sequence alignment - Have questions about bioinformatic tools or databases? Post questions here. Discuss and post interesting bioinformatics information.


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Old 08-16-2012, 09:33 AM
Pipette Filler
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Default similarity matrix of sequence alignment



hi,

when I did sequence alignment, I skipped the comparison the element with itself, so get zeros in diagonal. Is the processing is right?

which the best method to do clustering given similarity matrix of sequence alignment?

and if similarity matrix has zeros in diagonal , is that has affecting the clustering results?
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