| |||||||
| Register | Search | Today's Posts | Mark Forums Read |
| Bioinformatics Have questions about bioinformatic tools or databases? Post questions here. Discuss and post interesting bioinformatics information. |
 |
| | LinkBack | Thread Tools | Display Modes |
|
#1
03-01-2011, 04:31 AM
| |||||||||||
| |||||||||||
 New grad student Hi all, New to the forums and new to bioinformatics. Working on comparative genomics and need to analyze SNPs in two closely related species. I have a list of SNPs parsed from the 454 difference data of a fully sequenced and annotated bacterial genome. Need to compare it to 454 contigs of a cryptic species. Want to find 1. direction of SNPs in cryptic species (CG to AT or AT to GC) 2. coding position of SNPs What is the best way to go about this? There are a total of ~120 SNPs that blast to the cryptic species contigs, but some hit more than once. I have been using stand alone blast and perl to generate data. Thanks, James  |
|
| Tags |
| grad , student |
| Thread Tools | |
| Display Modes | |
|
|
Similar Threads | ||||
| Thread | Thread Starter | Forum | Replies | Last Post |
| Grad student position, Vancouver, Oil glands | Fred Sack | Arabidopsis and Plant Biology | 0 | 11-30-2007 11:10 PM |
| Funny Grad Student Joke | bioinfofreak | Science and Lab Jokes | 2 | 08-12-2006 01:39 PM |
| Graduate Student - Check List FUNNY! | moleculardude | Science and Lab Jokes | 1 | 07-30-2006 06:21 AM |
| Multiple Ph.D. student positions | Dmitry Belostotsky | Arabidopsis and Plant Biology | 0 | 04-14-2006 09:15 PM |
| Graduate student position | Arindam Majumdar | Zebrafish Forum | 0 | 02-05-2004 06:08 PM |
Linear Mode
