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Polyphen-2: Ranking SNPs in human genome

Polyphen-2: Ranking SNPs in human genome - Bioinformatics

Polyphen-2: Ranking SNPs in human genome - Have questions about bioinformatic tools or databases? Post questions here. Discuss and post interesting bioinformatics information.


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Old 10-22-2010, 12:24 PM
Pipette Filler
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Default Polyphen-2: Ranking SNPs in human genome



hi all,

I am working with the SNPs and using polyphen to rank the SNPs into deletarious or tolerated ones. My problem is that I want to run the tool for large batch query, but I dont know how to do it . Is there anyone who can guide me?

thanks in advance.
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Old 11-06-2010, 09:15 PM
Pipette Filler
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Default Re: Polyphen-2: Ranking SNPs in human genome

You could write a small python program that does that.

Consider these questions...
Have you been using python to write programs?
Do you know which modules to use if you want to write a custom program?
What kinds of searches would you do?
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genome , human , polyphen2 , ranking , snps


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