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Sr_08 10-08-2010 01:54 AM

converting DNA seq to FASTA format
 
Does anyone know of tools that can convert DNA seq to FASTA format.
I tried using the Expasy translate tool but, it gives me '-' spaces i betn seq
something like this :

RAG-LKAGHT-PTGAA

Omicron Lyrae 10-08-2010 08:20 PM

Re: converting DNA seq to FASTA format
 
Try there:

[Only registered and activated users can see links. Click Here To Register...]

Sr_08 10-12-2010 02:44 PM

Re: converting DNA seq to FASTA format
 
Thanks, but, I am looking for something that translates the DNA and gives the output in FASTA format...

Omicron Lyrae 10-13-2010 08:02 PM

Re: converting DNA seq to FASTA format
 
If I understand right, the translator of expasy works correct. Under the sequence input is a drop down box where you can check your output format.
There are three formats: First one converts Start codons to "Met" and stop codons to "Stop"; second one converts start codons to "M" and stop codons to "-"; the third and last option shows you your translation in the second format with addional nucleotide sequence.

vnikita 03-07-2011 10:31 AM

Re: converting DNA seq to FASTA format
 
You can use ReadSeq, a free tool available online. It converts the DNA sequence in different biologilocal file formats.

mfursov 03-10-2011 11:06 AM

Re: converting DNA seq to FASTA format
 
Load document to UGENE ([Only registered and activated users can see links. Click Here To Register...]) and use "Export -> Export sequence" from context menu.
There will be a lot of options with translation included.


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