hey! i'm an undergraduate bioinformatics student, i have a question (guess it's very simple for ppl who are not new to the field..)
i was asked to compare between two MSAs, one of them is for the results of PSI-BLAST and the other is for CS-BLAST results.
the question was: "which seems better? and why?" according to the characteristics of what good alignment is, including incorporation of data regarding secondary structure elements from a known structure of a protein in the family.
here are the links of my MSA results:
i'll be very grateful if u could help me!!