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MSA comparison

MSA comparison - Bioinformatics

MSA comparison - Have questions about bioinformatic tools or databases? Post questions here. Discuss and post interesting bioinformatics information.


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Old 09-03-2010, 06:38 PM
Pipette Filler
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Default MSA comparison



hey! i'm an undergraduate bioinformatics student, i have a question (guess it's very simple for ppl who are not new to the field..)

i was asked to compare between two MSAs, one of them is for the results of PSI-BLAST and the other is for CS-BLAST results.

the question was: "which seems better? and why?" according to the characteristics of what good alignment is, including incorporation of data regarding secondary structure elements from a known structure of a protein in the family.


here are the links of my MSA results:

toolkit.tuebingen.mpg.de/alnviz/results/viewerPSI

toolkit.tuebingen.mpg.de/alnviz/results/viewerCS

i'll be very grateful if u could help me!!
millie
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