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Protein database querying question

Protein database querying question - Bioinformatics

Protein database querying question - Have questions about bioinformatic tools or databases? Post questions here. Discuss and post interesting bioinformatics information.


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Old 11-06-2009, 11:04 AM
Pipette Filler
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Default Protein database querying question



Hi all,

I would like to know if there are tools available that would allow searching a protein database using a list of accession numbers/ID's (UniProt) as input, and getting as an output a corresponding list of values for a certain attribute, e.g. molecular mass. I'm working with MS data, and extracting this kind of information manually for a specific set of hundreds of proteins from Mascot result files is not feasible. Of course it is possible to generate a script for this, but if there are ready-made tools for this, it would be nice to know.

Any ideas?

Thanks,
Olli
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Old 11-06-2009, 12:09 PM
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Default Re: Protein database querying question

but molecular weight is already shown in swissprot I thought, next to the FASTA sequence of the isoform or its ID number?

Oh sorry u want like a tabular list... OK...Understood.

this seems to be the reverse of what you asked, but it still might be useful to someone else

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Last edited by nanofreak; 11-06-2009 at 12:18 PM.
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