I wonder if anyone can help me?
Using PCR I have managed to create allelic profiles for a large number of bacterial viruses using a large bank of oligos. As I have no sequence data, just a yes/no answer for each of the loci I am trying to find software that would either create a tree or some kind of figure that i could put in a paper that would show the differences between the genotypes for each virus or group numbers together to show frequency of that genotype.
I keep hitting a brick wall with all the software i have found so far as mainly MLST software and it requires the sequence data.
Hope someone can help!!!!!!!!!