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Multiple Sequence Alignments

Bioinformatics

Have questions about bioinformatic tools or databases? Post questions here. Discuss and post interesting bioinformatics information.



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  #1 (permalink)  
Old 10-25-2006, 06:00 AM
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Default Multiple Sequence Alignments
Hello!
I have question about Multiple Sequence Alignments...

what are the best online tools for bioinformatics alignments with more than 2 sequences comparison?

thanku
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  #2 (permalink)  
Old 11-02-2006, 05:11 AM
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Default Re: Multiple Sequence Alignments
There is this populat tool called BLAST...google it! You can also chk out the following link en.wikipedia.org/wiki/Sequence_alignment_software
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Old 11-02-2006, 09:37 AM
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Default Re: Multiple Sequence Alignments
Hi
CLASTAL W is a software which is specifically designed for multiple sequence alignment, so you can use it by opening the link below
http://align.genome.jp/
or you can use the following softwares
http://msa.cgb.ki.se/cgi-bin/msa.cgi
http://timpani.genome.ad.jp/~mafft/server/

i hope it will help you


regards
aftab
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Old 11-20-2006, 03:58 AM
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Default Re: Multiple Sequence Alignments
if you wish to carry our primer design then check this site premierbiosoft. Google it
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Old 12-10-2006, 01:45 AM
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Default Re: Multiple Sequence Alignments
i recommend google is the best site which will help u...
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Old 12-11-2006, 04:54 AM
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Default Re: Multiple Sequence Alignments
Hey guys, you aren't getting any points sending people to Google!

Here are some more multiple sequence alignments:

http://www.ebi.ac.uk/clustalw/

Multiple Alignment Tools
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Old 02-02-2007, 01:11 AM
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Default Re: Multiple Sequence Alignments
use clustalW at EBI for multiple sequence alignment.
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http://www.cyberpostdoc.org/
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Old 03-20-2007, 11:43 AM
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Default Re: Multiple Sequence Alignments
Quote:
Originally Posted by darkwng View Post
Hello!
I have question about Multiple Sequence Alignments...

what are the best online tools for bioinformatics alignments with more than 2 sequences comparison?

thanku
Hi
Several MSA programs available on the net:
  • ClustalW from ebi
  • Clustalw on bioweb.pasteur.fr
  • Match-Box which attempts to align proteins on the basis of their amino-acid properties-fundp.ac.be
  • DIALIGN-bibiserv.techfak.uni-bielefeld.de
Cheers
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Old 03-26-2007, 09:57 AM
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Default Re: Multiple Sequence Alignments
Great information here thanks Uruk and Cyberpostdoc.

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