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#1
09-26-2008, 01:22 PM
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 batch BLAST could anyone recommend me a suitable program that can blast multiple query sequences against multiple sequence databases? the thing is I'd like to compare large set of sequences from one particular species to entrez ncbi's databases of many other species, and try to find potential homologs in each of the species. Is there any program available online or as a standalone that could perform such tasks?  |
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megha vaidya (01-19-2010)
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#3
11-28-2008, 04:17 PM
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| Re: batch BLAST For Multiple Sequence Alignment you may use ClustalW, Feng & Doolittle,PileUp, SAGA |
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#4
01-19-2010, 08:09 AM
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 Re: batch BLAST you can use ncbi-blast for windows and its other versions for linux/unix... it takes minimum 100 sequences batch.. |
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admin (11-11-2010)
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#5
06-09-2010, 09:06 PM
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| Re: batch BLAST I don't specifically know the answer to your question, but wikipedia has a pretty extensive list of online or downloadable database searching/sequence alignment tools. I imagine something here is designed for exactly what you're looking for... [Only registered users see links. ] |
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