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NCBI Geo Database & GEOQuery

NCBI Geo Database & GEOQuery - Bioinformatics

NCBI Geo Database & GEOQuery - Have questions about bioinformatic tools or databases? Post questions here. Discuss and post interesting bioinformatics information.


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Old 09-13-2008, 11:33 PM
Pipette Filler
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Default NCBI Geo Database & GEOQuery



I am trying to analyze the gene expression data from NCBI GEO website
xttp://xxx.ncbi.nlm.nih.gov/geo/
(Please replace xxx by www and xttp by http)

locally. I have downloaded the GDS SOFT format files and am using GEOquery/BioConductor tool to query them.
I want to find list of all the genes specifically upregulated in a particular disease.

I don't want to use the E-utils or any remote utilities for this.

Any help is appreciated.

Last edited by babubatla; 09-15-2008 at 04:40 AM.
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