Science Forums Biology Forum Molecular Biology Forum Physics Chemistry Forum

Science Forums Biology Forum Molecular Biology Forum Physics Chemistry Forum (http://www.molecularstation.com/forum/)
-   Bioinformatics (http://www.molecularstation.com/forum/bioinformatics/)
-   -   NCBI Geo Database & GEOQuery (http://www.molecularstation.com/forum/bioinformatics/3944-ncbi-geo-database-geoquery.html)

babubatla 09-13-2008 11:33 PM

NCBI Geo Database & GEOQuery
 
I am trying to analyze the gene expression data from NCBI GEO website
xttp://xxx.ncbi.nlm.nih.gov/geo/
(Please replace xxx by www and xttp by http)

locally. I have downloaded the GDS SOFT format files and am using GEOquery/BioConductor tool to query them.
I want to find list of all the genes specifically upregulated in a particular disease.

I don't want to use the E-utils or any remote utilities for this.

Any help is appreciated.


All times are GMT. The time now is 02:42 PM.

Powered by vBulletin® Version 3.8.4
Copyright ©2000 - 2014, Jelsoft Enterprises Ltd.
Copyright 2005 - 2012 Molecular Station | All Rights Reserved

Page generated in 0.08880 seconds with 11 queries