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vegetative bud sequences in ncbi databases

vegetative bud sequences in ncbi databases - Bioinformatics

vegetative bud sequences in ncbi databases - Have questions about bioinformatic tools or databases? Post questions here. Discuss and post interesting bioinformatics information.


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Old 06-05-2007, 05:22 AM
Pipette Filler
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Default vegetative bud sequences in ncbi databases



Hi everybody,

I'm trying to find out how can I compare a list of probes against a database to see what the frequencies are of probes representing vegetative bud among them??

Does anybody know how to do this?

Thank you.
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Old 06-06-2007, 08:59 AM
Pipette Filler
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Default Re: vegetative bud sequences in ncbi databases

Quote:
Originally Posted by gazits View Post
Hi everybody,

I'm trying to find out how can I compare a list of probes against a database to see what the frequencies are of probes representing vegetative bud among them??

Does anybody know how to do this?

Thank you.
Do a BLAST with blast [Only registered users see links. ]client [blastcl3 download from ftp://ftp.ncbi.nih.gov/blast/network/netblast/ and then parse the result with bioperl. You need PERL for this. Check out PERL [Only registered users see links. ] and tutorial [Only registered users see links. ]to get going. For parsing the results of blast output, follow tutorial at [Only registered users see links. ] .
All this can be automated with Taverna as mentioned in [Only registered users see links. ] .

Last edited by admin; 06-06-2007 at 01:26 PM.
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