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-   -   how assign values for match, mismatch, gap when calculate score function? (http://www.molecularstation.com/forum/biochemistry-forum/86236-how-assign-values-match-mismatch-gap-when-calculate-score-function.html)

FELITSA 08-17-2012 10:20 AM

how assign values for match, mismatch, gap when calculate score function?
 
how can asssign value for match, mismatch, gap
sometime gap is given -1, and other time 0, or -2

the same thing for match , sometime is given 2 and i other time 1.

how can know the best?

thanks in advance


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